Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,230,215 – 5,230,334 |
Length | 119 |
Max. P | 0.997327 |
Location | 5,230,215 – 5,230,334 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 98.49 |
Mean single sequence MFE | -33.23 |
Consensus MFE | -32.68 |
Energy contribution | -32.52 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.02 |
Structure conservation index | 0.98 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5230215 119 + 22407834 AUAAACUUGUACGCAGACAUUGUAUAUAUAGUAUAUAUGGCUAUAGCUUGGCGGCACGAAAAUAAAGUCAAGCUGUCUGCGCAUUUGUCGUCUGCGAUUUGUUGGCAACAUUUUACGUG ...(((..((.(((((((..(((((((...)))))))((((.((((((((((..............))))))))))..)).))......)))))))))..)))(....).......... ( -33.54) >DroSec_CAF1 7578 119 + 1 AUAAACUUGUACGCAGACAUUGUAUAUAUAGUAUAUAUGGCUAUAGCUUGGCGGCACGAAAAUAAAGUCAAGCUGUCUGCGCAUUUGUCGUCUGCGAUUUGUUGGCAACAUUUAACGUG ...(((..((.(((((((..(((((((...)))))))((((.((((((((((..............))))))))))..)).))......)))))))))..)))(....).......... ( -33.54) >DroSim_CAF1 8500 119 + 1 AUAAACUUGUACGCAGACAUUGUAUAUAUAGUAUAUAUGGCUAUGGCUUGGCGGCACGAAAAUAAAGUCAAGCUGUCUGCGCAUUUGUCGUCUGCGAUUUGUUGGCAACAUUUAACGUG ...(((..((.(((((((...(((((((...)))))))(((.(((((..((((((..((........))..)))))).)).)))..))))))))))))..)))(....).......... ( -33.00) >DroEre_CAF1 365 119 + 1 AUAAACUUGUACGCAGACAUUGUAUAUAUAGUAUAUAUGGCUAUAGCUUGGCGGCACAAAAAUAAAGUCAAGCUGUCUGCGCAUUUGUCGUCUGCGAUUUGUUGGCAACAUUUAACGUG ...(((..((.(((((((..(((((((...)))))))((((.((((((((((..............))))))))))..)).))......)))))))))..)))(....).......... ( -33.54) >DroYak_CAF1 9384 119 + 1 AUAAACUUGUACGCAGACAUUGUAUAUAUAGUAUAUAUGGCUAUAGCUUGGCGGCACGAAAAUAAAGUCAAGCUGUCUGCGCAUUUGUCGUCUGCGAUUUGUUGCCAACAUUUUACGUG ...(((..((.(((((((..(((((((...)))))))((((.((((((((((..............))))))))))..)).))......)))))))))..)))................ ( -32.54) >consensus AUAAACUUGUACGCAGACAUUGUAUAUAUAGUAUAUAUGGCUAUAGCUUGGCGGCACGAAAAUAAAGUCAAGCUGUCUGCGCAUUUGUCGUCUGCGAUUUGUUGGCAACAUUUAACGUG ...(((..((.(((((((..(((((((...)))))))((((.((((((((((..............))))))))))..)).))......)))))))))..)))(....).......... (-32.68 = -32.52 + -0.16)
Location | 5,230,215 – 5,230,334 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 98.49 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -23.72 |
Energy contribution | -24.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.95 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5230215 119 - 22407834 CACGUAAAAUGUUGCCAACAAAUCGCAGACGACAAAUGCGCAGACAGCUUGACUUUAUUUUCGUGCCGCCAAGCUAUAGCCAUAUAUACUAUAUAUACAAUGUCUGCGUACAAGUUUAU ...(((((.(((((.(...........).)))))..(((((((((((((((.(..(((....)))..).)))))(((((.........))))).......))))))))))....))))) ( -24.10) >DroSec_CAF1 7578 119 - 1 CACGUUAAAUGUUGCCAACAAAUCGCAGACGACAAAUGCGCAGACAGCUUGACUUUAUUUUCGUGCCGCCAAGCUAUAGCCAUAUAUACUAUAUAUACAAUGUCUGCGUACAAGUUUAU ..((((.....(((....)))......)))).....(((((((((((((((.(..(((....)))..).)))))(((((.........))))).......))))))))))......... ( -24.40) >DroSim_CAF1 8500 119 - 1 CACGUUAAAUGUUGCCAACAAAUCGCAGACGACAAAUGCGCAGACAGCUUGACUUUAUUUUCGUGCCGCCAAGCCAUAGCCAUAUAUACUAUAUAUACAAUGUCUGCGUACAAGUUUAU ..((((.....(((....)))......)))).....(((((((((((((((.(..(((....)))..).))))).......((((((...))))))....))))))))))......... ( -23.50) >DroEre_CAF1 365 119 - 1 CACGUUAAAUGUUGCCAACAAAUCGCAGACGACAAAUGCGCAGACAGCUUGACUUUAUUUUUGUGCCGCCAAGCUAUAGCCAUAUAUACUAUAUAUACAAUGUCUGCGUACAAGUUUAU ..((((.....(((....)))......)))).....(((((((((((((((.(..(((....)))..).)))))(((((.........))))).......))))))))))......... ( -25.10) >DroYak_CAF1 9384 119 - 1 CACGUAAAAUGUUGGCAACAAAUCGCAGACGACAAAUGCGCAGACAGCUUGACUUUAUUUUCGUGCCGCCAAGCUAUAGCCAUAUAUACUAUAUAUACAAUGUCUGCGUACAAGUUUAU ..(((......(((....))).......))).....(((((((((((((((.(..(((....)))..).)))))(((((.........))))).......))))))))))......... ( -27.82) >consensus CACGUUAAAUGUUGCCAACAAAUCGCAGACGACAAAUGCGCAGACAGCUUGACUUUAUUUUCGUGCCGCCAAGCUAUAGCCAUAUAUACUAUAUAUACAAUGUCUGCGUACAAGUUUAU ..((((.....(((....)))......)))).....(((((((((((((((.(..(((....)))..).))))).......((((((...))))))....))))))))))......... (-23.72 = -24.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:58 2006