Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 574,970 – 575,077 |
Length | 107 |
Max. P | 0.726786 |
Location | 574,970 – 575,077 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 92.52 |
Mean single sequence MFE | -41.60 |
Consensus MFE | -34.97 |
Energy contribution | -36.20 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.06 |
Mean z-score | -2.25 |
Structure conservation index | 0.84 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 574970 107 + 22407834 AAGGAGCAGUGCCAGUCCAAGAGGAAGCGCUAUAUGCAGCUGUACUGCACCCACAUCUGGUACGAGGAUUGGGCGUGCAACGAGUGCUGCAAGGGAGAUCGGUGCAA .....(((((((...(((....))).)))))...((((((.....(((((((..((((.......))))..)).)))))......))))))............)).. ( -33.30) >DroPse_CAF1 15093 107 + 1 AAGGAGCAGUGCCAGUCCAAGCGGAAGCGCUACAUGCAGCUCUACUGUACCCACAUCUGGUACGAGGAUUGGGCCUGCAACGAGUGUUGCCCAGGCGAUCGCUGCAA .....(((((((((((((.((..((.((((.....)).))))..))(((((.......)))))..)))))))(((((((((....)))))..))))...)))))).. ( -44.80) >DroPer_CAF1 15077 107 + 1 AAGGAGCAGUGCCAGUCCAAGCGGAAACGCUAUAUGCAGCUCUACUGCACCCACAUCUGGUACGAGGAUUGGGCCUGCAACGAGUGUUGCCCAGGCGAUCGCUGCAA .....(((((((((((((.((((....))))...(((((.....))))).(((....))).....)))))))(((((((((....)))))..))))...)))))).. ( -46.70) >consensus AAGGAGCAGUGCCAGUCCAAGCGGAAGCGCUAUAUGCAGCUCUACUGCACCCACAUCUGGUACGAGGAUUGGGCCUGCAACGAGUGUUGCCCAGGCGAUCGCUGCAA .....(((((((((((((.((((....))))...(((((.....))))).(((....))).....)))))))(((((((((....)))))..))))...)))))).. (-34.97 = -36.20 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:53 2006