Locus 1919

Sequence ID 2L_DroMel_CAF1
Location 5,227,831 – 5,227,944
Length 113
Max. P 0.566596
window3091

overview

Window 1

Location 5,227,831 – 5,227,944
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.85
Mean single sequence MFE -31.20
Consensus MFE -27.42
Energy contribution -27.92
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.88
SVM decision value 0.07
SVM RNA-class probability 0.566596
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5227831 113 - 22407834
GUUGCAACAUC---AUCAGCCAUAAUCACAGUAGCCAUUGAAGGAAGCUAAC----CCGCAGGCGAAAAAUUAUAAAAUCCAUGUGGGCUACUGUUGGUUAUUGAUUUCGCGGUUGGUAA
...........---((((((((((((((((((((((.....((....))...----.((((((................)).)))))))))))).))))))).(....)..))))))).. ( -30.29)
>DroSec_CAF1 5258 112 - 1
GUUGCAACAUC---AUCAGCCAUAAUCACAGUAGCCAUUGAAGGAAGCUAGC-----CGCAGGCGAAAAAUUAUAAAAUCCAUGUGGGCUACUGUUGGUUAUUGAUUUCGCGGUUGGUAA
...........---((((((((((((((((((((((.....((....)).((-----(...)))......................)))))))).))))))).(....)..))))))).. ( -30.50)
>DroSim_CAF1 6148 117 - 1
GUUGCAACAUC---AUCAGCCAUAAUCACAGUAGCCAUUGAAGGAAGCUAGCCAGCCCGCAGGCGAAAAAUUAUAAAAUCCAUGUGGGCUACUGUUGGUUAUUGAUUUCGCGAUUGGUAA
(((((...(((---(..(((((.....(((((((((......((.......)).(((....)))......................))))))))))))))..))))...)))))...... ( -32.20)
>DroYak_CAF1 6364 116 - 1
GUUGCAACAUCAUCAUCAGCCAUAAUCACAGUAGCCAUUGAAGGAAGCCAAC----CCGCAGGCGAAAAAUUUGAAAAACCAUGUGGGCUACUGUUGGUUAUUGAUUUCGCGGUUGGUAA
..............((((((((((((((((((((((......((..(((...----.....))).......((....)))).....)))))))).))))))).(....)..))))))).. ( -31.80)
>consensus
GUUGCAACAUC___AUCAGCCAUAAUCACAGUAGCCAUUGAAGGAAGCUAAC____CCGCAGGCGAAAAAUUAUAAAAUCCAUGUGGGCUACUGUUGGUUAUUGAUUUCGCGGUUGGUAA
..............((((((((((((((((((((((.....((....))........((((((................)).)))))))))))).))))))).(....)..))))))).. (-27.42 = -27.92 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:44 2006