Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,227,220 – 5,227,325 |
Length | 105 |
Max. P | 0.500000 |
Location | 5,227,220 – 5,227,325 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.58 |
Mean single sequence MFE | -29.04 |
Consensus MFE | -21.77 |
Energy contribution | -22.15 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -1.41 |
Structure conservation index | 0.75 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5227220 105 - 22407834 GAAGUCGGUGGGACUUC-CCUCUCCACAGAAGCUUGGGCAGCAUC--------------CAUUCACAGCAUCCGGCUGCCCACGCACUAAAUUUUGUGAAAGAAAAAGCCUCUAAACUAG ......((((((....)-))(((.(((((((((.((((((((...--------------...............)))))))).))......)))))))..)))....))).......... ( -29.87) >DroSec_CAF1 4667 99 - 1 GAAGUCGGUGGAACUCG-ACUCUCCACAGAAGCUUGGGCAGCAUC--------------C----ACAGCAUCCGGCUGCCCACGCACUAAAU-UUGUGAAAGAAAAAGCCUCA-AACUAG ..(((..(((((.....-....))))).((.(((((((((((...--------------.----..........))))))).((((......-.)))).......)))).)).-.))).. ( -27.14) >DroSim_CAF1 5549 100 - 1 GAAGUCGGUGGGACUUG-GCUCUCCACAGAAGCUUGGGCAGCAUC--------------C----ACAGCAUCCGGCUGCCCACGCACUAAAU-UUGUGAAAGAAAAAGCCUCAAAACUAG .(((((.....)))))(-(((((.((((((.((.((((((((...--------------.----..........)))))))).))......)-)))))..)))....))).......... ( -28.84) >DroYak_CAF1 5750 118 - 1 GAAGUCGAUGGUACUUCCCCUUUCCACAGAAGCUUGGGCAGCAUCUACAGCAUCUACAGCAUCCACAGCAUCCGGCUGCCCACGCACUAAAU--UGGGAAAGAAAAAGACUCAAAACUAG ((.(((...((.....)).((((((......((.((((((((.......(......).((.......)).....)))))))).)).(.....--.))))))).....)))))........ ( -30.30) >consensus GAAGUCGGUGGGACUUC_CCUCUCCACAGAAGCUUGGGCAGCAUC______________C____ACAGCAUCCGGCUGCCCACGCACUAAAU_UUGUGAAAGAAAAAGCCUCAAAACUAG ....((.(((((..........))))).)).((.((((((((................................)))))))).))................................... (-21.77 = -22.15 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:43 2006