Locus 1915

Sequence ID 2L_DroMel_CAF1
Location 5,226,372 – 5,226,491
Length 119
Max. P 0.809110
window3081

overview

Window 1

Location 5,226,372 – 5,226,491
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.63
Mean single sequence MFE -34.59
Consensus MFE -27.06
Energy contribution -27.88
Covariance contribution 0.81
Combinations/Pair 1.05
Mean z-score -2.10
Structure conservation index 0.78
SVM decision value 0.64
SVM RNA-class probability 0.809110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5226372 119 + 22407834
AUUUAGUUGCCGCAAUUGUUUGUGAGGUUGCCAAAUUUUAUCAAGGCAUUUGCGAAUUUAAGUCUGUUUGCGCUUGAGUCAAUUGGCGCACGGAACUUUCCUUUGU-GGCGUACUGAAUG
(((((((((((((((..(((((..((..((((............))))))..)))))..((((((((..(((((..........))))))))).))))....))))-)))).))))))). ( -37.70)
>DroSec_CAF1 3827 119 + 1
AUUUAGUUACCGCAAUUGUUUGUGAGCUUGCCAAAUUUUAUCAUAGCAUUUGCGUAUUUAAGUCCGUUUGCGCUUGAGUAAA-UGGCGCACGGAACUUUCCUUUGCAAGCGAACUGAAUG
((((((((..(((((....))))).((((((..............((....))......((((((((..(((((........-.))))))))).))))......)))))).)))))))). ( -34.90)
>DroSim_CAF1 4704 119 + 1
AUUUAGUUACCGCAAUUGUUUGUGAGCUUGCCAAAUUUUAUCAUAGCAUUUGCGUAUUCAAGUCUGUUUGCGCUUGAGUAAA-UGGCGCACGGAACUUUCCUUUGCCAGCGAACUGAAUG
((((((((..(((((.((((.((((...............)))))))).)))))(((((((((........)))))))))..-(((((...(((....)))..)))))...)))))))). ( -32.76)
>DroYak_CAF1 4894 118 + 1
AUUUAGUUGCCGCAAUUGUUUGUGAGGUUGCCAAAUUUUAUCAAGGCAUUUGCGUAUUUAAGUCUGUUUUCGCUUGAGUAAA-UGGCGCACGGAACUUUCCCUUGCGA-AGCACUGAAUG
(((((((.(((((((.(((((((((((((....))))))))..))))).)))).(((((((((........)))))))))..-.)))(((.((.......)).)))..-...))))))). ( -33.00)
>consensus
AUUUAGUUACCGCAAUUGUUUGUGAGCUUGCCAAAUUUUAUCAAAGCAUUUGCGUAUUUAAGUCUGUUUGCGCUUGAGUAAA_UGGCGCACGGAACUUUCCUUUGC_AGCGAACUGAAUG
((((((((..(((((.((((.((((((((....))))))))...)))).))))).....((((((((..(((((..........))))))))).)))).............)))))))). (-27.06 = -27.88 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:35 2006