Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,225,572 – 5,225,692 |
Length | 120 |
Max. P | 0.676699 |
Location | 5,225,572 – 5,225,692 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -38.41 |
Consensus MFE | -36.34 |
Energy contribution | -36.40 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.52 |
Structure conservation index | 0.95 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5225572 120 - 22407834 CAGGGUUCGUGUCUCGGCUAAGUGCCUCUUCAGACGUCACAGGCUCUUUCUGUUUGUUGGUAUUGCAGUUAAUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC ...((((((((....(((.....)))........(((((..((((((((((((..(........(((((....))))).......)..)).))))....))))))..))))))))))))) ( -38.76) >DroSec_CAF1 3054 120 - 1 CGGGGUUCGUGUCUCGGCUAACUGCCUCUUCAGACGUCACAGGCUCUUUGUGUUUGUUGGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUACAUGAGCC ...((((((((((((((((..(((..((((((((((((((((((.......))))).)))....(((((....)))))...)))))))...)))..)))..)))))).)))))..))))) ( -40.10) >DroSim_CAF1 3945 120 - 1 CAUGGUUCGUGUCUCGGCUAAGUGCCUCUUCAGACGUCACAGGCUCUUUGUGUUUGUUGGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC ...((((((((....(((.....)))........(((((..(((((((((..((((((.(.((.(((((....)))))....)).).))).)))..)))))))))..))))))))))))) ( -39.70) >DroYak_CAF1 4092 120 - 1 CAAGGUUCGUGUCCCGGCUAAGCACCUCUUCAGACGUCACAGGCUCUUUCUGUUUGUUAGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC ...(((((((((..((....(((.((..((((((((..((((((.......)))))).......(((((....)))))...))))))))(((....))))).)))..))..))))))))) ( -35.10) >consensus CAGGGUUCGUGUCUCGGCUAAGUGCCUCUUCAGACGUCACAGGCUCUUUCUGUUUGUUGGUAUUGCAGUUACUGCUGCUUUUGUUUGGACUAGAAUUAGGGAGCUGAUGAUGCAUGAGCC ...(((((((((...(((.....))).........((((..((((((((...((((((.(.((.(((((....)))))....)).).))).)))...))))))))..))))))))))))) (-36.34 = -36.40 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:31 2006