Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,222,727 – 5,222,846 |
Length | 119 |
Max. P | 0.661649 |
Location | 5,222,727 – 5,222,846 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.14 |
Mean single sequence MFE | -26.71 |
Consensus MFE | -23.65 |
Energy contribution | -23.90 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.89 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5222727 119 - 22407834 AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA-AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA .............(((((((................-....)))))))((((((((((((((..((.(((((.(((((......)))..)).))))).)).)))))...)))).))))). ( -26.45) >DroSec_CAF1 237 108 - 1 AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA-AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGA-----------AGCGGCUGAAUGCAAUUAAAUGCGAAG .............(((((((................-....)))))))((((((((((((((..((.((((((.......))-----------)))).)).)))))...)))).))))). ( -27.55) >DroSim_CAF1 1077 119 - 1 AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA-AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA .............(((((((................-....)))))))((((((((((((((..((.(((((.(((((......)))..)).))))).)).)))))...)))).))))). ( -26.45) >DroYak_CAF1 1141 120 - 1 AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAAAAAAAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA .............(((((((.....................)))))))((((((((((((((..((.(((((.(((((......)))..)).))))).)).)))))...)))).))))). ( -26.40) >consensus AAACAAAUCACCUUGUGCCAGCCACGAACCGUAAAA_AAUAUGGCACAUUCGCUUUGGCAUUAAAGGCGUUUUUAUGAAUGAACUCAACUGCAAGCGGCUGAAUGCAAUUAAAUGCGAAA .............(((((((.....................)))))))((((((((((((((..((.(((((....................))))).)).)))))...)))).))))). (-23.65 = -23.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:18 2006