Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,222,538 – 5,222,653 |
Length | 115 |
Max. P | 0.657103 |
Location | 5,222,538 – 5,222,653 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.74 |
Mean single sequence MFE | -45.08 |
Consensus MFE | -37.97 |
Energy contribution | -38.10 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.05 |
Mean z-score | -1.91 |
Structure conservation index | 0.84 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5222538 115 + 22407834 CGUUGUGGCCAUUGGGCGCUAGUUUUACGGCCAUUUGCCGCCUGCGACAGCCAUCGAGGAAAACAUUAAGUGCGUU-UUCCUCGACGGAGAUGAGGGGCAGACA----GCCGUUAGAUGA ....(((.((...)).)))..((((.(((((..((((((.(((.((....((.(((((((((((.........)))-)))))))).))...)))))))))))..----))))).)))).. ( -46.90) >DroSec_CAF1 48 115 + 1 CGUUGUGGCCAUUGGGCGCUAGUUUUACGGCCAUUUGCCGCCUGCGACAGCCAUCGAGGAAAACAUUAAGUGCGUU-UUCCUCGACGGAGAUGAGGGGCAGACA----GCCGUUAGAUGA ....(((.((...)).)))..((((.(((((..((((((.(((.((....((.(((((((((((.........)))-)))))))).))...)))))))))))..----))))).)))).. ( -46.90) >DroSim_CAF1 888 115 + 1 CGUUGUGGCCAUUGGGCGCUAGUUUUACGGCCAUUUGCCGCCUGCGACAGCCAUCGAGGAAAACAUUAAGUGCGUU-UUCCUCGUCGGAGAUGAGGGGCAGACA----GCCGUUAGAUGA ....(((.((...)).)))..((((.(((((..((((((.(((.((....((..((((((((((.........)))-)))))))..))...)))))))))))..----))))).)))).. ( -45.60) >DroYak_CAF1 941 120 + 1 CGUUGUGGCCAUUGGGCGCUAGUUUUACGGCCAUUUGCCGCCUGCGACAGCCAUCGAGGGAAGCAUUAAGUGCGUUUUUCCUCGAUAGAGAUGAGGGGCAGACAGCCAGCCGUUAGAUGA .(((((((((...((((....))))...)))))((((((.(((((....)).((((((((((((((...))))...)))))))))).......))))))))))))).............. ( -40.90) >consensus CGUUGUGGCCAUUGGGCGCUAGUUUUACGGCCAUUUGCCGCCUGCGACAGCCAUCGAGGAAAACAUUAAGUGCGUU_UUCCUCGACGGAGAUGAGGGGCAGACA____GCCGUUAGAUGA ....(((.((...)).)))..((((.(((((..((((((.(((.((....((.(((((((((((.........))).)))))))).))...)))))))))))......))))).)))).. (-37.97 = -38.10 + 0.13)
Location | 5,222,538 – 5,222,653 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.74 |
Mean single sequence MFE | -46.05 |
Consensus MFE | -36.65 |
Energy contribution | -36.59 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -4.03 |
Structure conservation index | 0.80 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5222538 115 - 22407834 UCAUCUAACGGC----UGUCUGCCCCUCAUCUCCGUCGAGGAA-AACGCACUUAAUGUUUUCCUCGAUGGCUGUCGCAGGCGGCAAAUGGCCGUAAAACUAGCGCCCAAUGGCCACAACG .......(((((----(((.((((((((..(.(((((((((((-((((.......)))))))))))))))..)..).))).)))).)))))))).......(.(((....))))...... ( -49.00) >DroSec_CAF1 48 115 - 1 UCAUCUAACGGC----UGUCUGCCCCUCAUCUCCGUCGAGGAA-AACGCACUUAAUGUUUUCCUCGAUGGCUGUCGCAGGCGGCAAAUGGCCGUAAAACUAGCGCCCAAUGGCCACAACG .......(((((----(((.((((((((..(.(((((((((((-((((.......)))))))))))))))..)..).))).)))).)))))))).......(.(((....))))...... ( -49.00) >DroSim_CAF1 888 115 - 1 UCAUCUAACGGC----UGUCUGCCCCUCAUCUCCGACGAGGAA-AACGCACUUAAUGUUUUCCUCGAUGGCUGUCGCAGGCGGCAAAUGGCCGUAAAACUAGCGCCCAAUGGCCACAACG .......(((((----(((.((((((((..(.(((.(((((((-((((.......))))))))))).)))..)..).))).)))).)))))))).......(.(((....))))...... ( -44.10) >DroYak_CAF1 941 120 - 1 UCAUCUAACGGCUGGCUGUCUGCCCCUCAUCUCUAUCGAGGAAAAACGCACUUAAUGCUUCCCUCGAUGGCUGUCGCAGGCGGCAAAUGGCCGUAAAACUAGCGCCCAAUGGCCACAACG .......((((((.(((((((((....((...(((((((((.((...(((.....))))).))))))))).))..)))))))))....)))))).......(.(((....))))...... ( -42.10) >consensus UCAUCUAACGGC____UGUCUGCCCCUCAUCUCCGUCGAGGAA_AACGCACUUAAUGUUUUCCUCGAUGGCUGUCGCAGGCGGCAAAUGGCCGUAAAACUAGCGCCCAAUGGCCACAACG .......(((((....((.(((((........(((((((((((....(((.....))).)))))))))))........)))))))....))))).......(.(((....))))...... (-36.65 = -36.59 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:17 2006