Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,218,589 – 5,218,709 |
Length | 120 |
Max. P | 0.605320 |
Location | 5,218,589 – 5,218,709 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -38.79 |
Consensus MFE | -26.33 |
Energy contribution | -27.89 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.20 |
Mean z-score | -1.65 |
Structure conservation index | 0.68 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5218589 120 - 22407834 GCCUCUUUCAGCUCCUUCUGGAUGGCCUCGGCAUCCUCCUCUUCCAGGAAAUGGGCAGCGAUGCUGCAGAAGCCGUCGAAGUUAACCUUGCCGGUGUCCUCCGGAUCGUUGUCGUCGAUC (((...(((((......))))).))).(((((.((((........))))....(((((((((.(((.((..((((.(((.(....).))).))))...)).))))))))))))))))).. ( -40.60) >DroPse_CAF1 5290 120 - 1 GCCUCCUUCAGCUCCUUUUGAAUGGCCUCGGCAUCCUCCUCCUCGAGGAAAUGGGCGGCAAUGGCACAGAAGCCAUCGAAAUUCACCUUGCCCGUGUCCUCGGGAUCGUUAUCGUCGACC (((...(((((......))))).))).(((((.......(((.((((((.((((((((..(((((......))))).(.....)...)))))))).)))))))))........))))).. ( -41.06) >DroWil_CAF1 4588 120 - 1 GCCUCCUUCAGUUCCUUCUGAAUGGCCUCGGCAUCUUCCUCCUCGAGAAAAUGGGCUGCUAUGUUACAAAAGCCAUCAAAGUUAACUUUACCAGUAUCUUCUGGAUCGUUUUCAUCGAUA (((.(((((((......))))).))....)))..........(((((((((((((((.............))))...((((....)))).((((......))))..))))))).)))).. ( -31.32) >DroPer_CAF1 5430 120 - 1 GCCUCCUUCAGCUCCUUUUGGAUGGCCUCGGCAUCCUCCUCCUCGAGGAAAUGGGCGGCAAUGGCACAGAAGCCAUCGAAAUUCACCUUGCCCGUGUCCUCGGGAUCGUUAUCGUCGACC ((((((.............))).))).(((((.......(((.((((((.((((((((..(((((......))))).(.....)...)))))))).)))))))))........))))).. ( -42.18) >consensus GCCUCCUUCAGCUCCUUCUGAAUGGCCUCGGCAUCCUCCUCCUCGAGGAAAUGGGCGGCAAUGGCACAGAAGCCAUCGAAAUUAACCUUGCCCGUGUCCUCGGGAUCGUUAUCGUCGACC (((...(((((......))))).))).(((((.........((((((((.(((((((((.(((((......))))).).........)))))))).)))))))).........))))).. (-26.33 = -27.89 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:15 2006