Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,217,400 – 5,217,503 |
Length | 103 |
Max. P | 0.569284 |
Location | 5,217,400 – 5,217,503 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 87.88 |
Mean single sequence MFE | -19.58 |
Consensus MFE | -17.69 |
Energy contribution | -18.19 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 0.90 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5217400 103 - 22407834 CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC-UCUACCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC ..........(((.....)))(((.((((..((((.(.((((((.....-........))))))).))))...)))).)))....................... ( -19.72) >DroSec_CAF1 6630 101 - 1 CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC---UACCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC ..........(((.....)))(((.((((..((((.(.((((((.....---......))))))).))))...)))).)))....................... ( -19.90) >DroSim_CAF1 6643 101 - 1 CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC---UGCCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC ..........(((.....)))(((.((((..((((.(.((((((.....---......))))))).))))...)))).)))....................... ( -19.90) >DroYak_CAF1 12879 89 - 1 CGAUUCCACAGGCUCUUCGCCAUUUGCUGACUACUUGCUGGCUACCCACCACUACCCAAAGCCACUAGUGCUGCGGUUAACCAGACACC--------------- ..........(((.....)))..............((((((..(((((.(((((...........))))).)).)))...)))).))..--------------- ( -18.80) >consensus CAAUUCCACAGGCUCUUUGCCGUUUGCUGACUACUUGCUGGCUACCCAC___UACCCAUAGCCACUAGUGCUGCGGUUAACCACACACCCAUCCGAUCCUCAAC ..........(((.....)))(((.((((..((((.(.((((((..............))))))).))))...)))).)))....................... (-17.69 = -18.19 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:14 2006