Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,216,041 – 5,216,201 |
Length | 160 |
Max. P | 0.940171 |
Location | 5,216,041 – 5,216,161 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -38.65 |
Consensus MFE | -32.35 |
Energy contribution | -33.23 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.05 |
Mean z-score | -2.56 |
Structure conservation index | 0.84 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5216041 120 + 22407834 AGCUACGUAUUUGGCAUUGUGCACCGCUUCCGUAUAGCAGGGUUCAUAGGCUAGUUUUGGAUAAUCCAAGGAUAUCAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGGUAUU ((((((((.....((.....)).((((((((.....((((((((((...(.((.((((((.....)))))).)).)....)).))))))))....)))..)))))))))))))....... ( -41.80) >DroSec_CAF1 5282 120 + 1 AGCUACGUAUUUGGCAUUGUGAACCGCUUCCAUAUAGCACGGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAUUAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGAUAUU ((((((((...((((.((((((((((((.......)))..)))))))))))))((((..((((.....(((((((......)).))))).))))..)))).....))))))))....... ( -38.70) >DroSim_CAF1 5302 120 + 1 AGCUACGUAUUUGGCAUUGUGCACCGCUUCCGUAUAGCAGGGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAUCAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGAUAUU ((((((((.....((.....)).((((((((.....((((((((((...(.((.((((((.....)))))).)).)....)).))))))))....)))..)))))))))))))....... ( -41.80) >DroYak_CAF1 11511 120 + 1 ACCUACAUAUUUGGCAUUGUGAACCGCUUCCGUAUAGCACGGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAACACAUUAUAAUCCUGUUUCAAGAACAGCGGGCGUAGCUGAAUAUU ......(((((..((.((((((((((((.......)))..)))))))))(((..(((((((.......(((((...........)))))..)))))))..))).......))..))))). ( -32.30) >consensus AGCUACGUAUUUGGCAUUGUGAACCGCUUCCGUAUAGCACGGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAUCAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGAUAUU ((((((((...((((.((((((((((((.......)))..)))))))))))))(((((.((((.....(((((...........))))).)))).))))).....))))))))....... (-32.35 = -33.23 + 0.88)
Location | 5,216,041 – 5,216,161 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -25.81 |
Energy contribution | -25.93 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.07 |
Mean z-score | -1.74 |
Structure conservation index | 0.87 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5216041 120 - 22407834 AAUACCCAGCUACGUCCGCUGUUCCUGACACAGGAUUACAAUUUGAUAUCCUUGGAUUAUCCAAAACUAGCCUAUGAACCCUGCUAUACGGAAGCGGUGCACAAUGCCAAAUACGUAGCU .......(((((((((((((..(((((...))))).............(((((((.....))))...((((...........))))...)))))))).((.....)).....)))))))) ( -31.00) >DroSec_CAF1 5282 120 - 1 AAUAUCCAGCUACGUCCGCUGUUCCUGACACAGGAUUACAAUUUAAUAUCCUUGGACUAUCCAAAACUAGCCUAUGAACCGUGCUAUAUGGAAGCGGUUCACAAUGCCAAAUACGUAGCU .......((((((((..((((.(((((...)))))................((((.....))))...))))...((((((((.((....))..))))))))...........)))))))) ( -32.20) >DroSim_CAF1 5302 120 - 1 AAUAUCCAGCUACGUCCGCUGUUCCUGACACAGGAUUACAAUUUGAUAUCCUUGGACUAUCCAAAACUAGCCUAUGAACCCUGCUAUACGGAAGCGGUGCACAAUGCCAAAUACGUAGCU .......(((((((((((((..(((((...))))).............(((((((.....))))...((((...........))))...)))))))).((.....)).....)))))))) ( -31.00) >DroYak_CAF1 11511 120 - 1 AAUAUUCAGCUACGCCCGCUGUUCUUGAAACAGGAUUAUAAUGUGUUAUCCUUGGACUAUCCAAAACUAGCCUAUGAACCGUGCUAUACGGAAGCGGUUCACAAUGCCAAAUAUGUAGGU .........(((((...((((((.........((((.((.....)).))))((((.....))))))).)))...((((((((.((....))..))))))))............))))).. ( -23.80) >consensus AAUAUCCAGCUACGUCCGCUGUUCCUGACACAGGAUUACAAUUUGAUAUCCUUGGACUAUCCAAAACUAGCCUAUGAACCCUGCUAUACGGAAGCGGUGCACAAUGCCAAAUACGUAGCU .......(((((((((((((..(((((...))))).............(((((((.....))))...((((...........))))...))))))))...............)))))))) (-25.81 = -25.93 + 0.13)
Location | 5,216,081 – 5,216,201 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -37.45 |
Consensus MFE | -31.74 |
Energy contribution | -32.05 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.08 |
Mean z-score | -1.84 |
Structure conservation index | 0.85 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5216081 120 + 22407834 GGUUCAUAGGCUAGUUUUGGAUAAUCCAAGGAUAUCAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGGUAUUGGGACUGAAAUCGCGGUGCCCGUUGAAUCCAUGGAUCAGA (((((((..(((.((((..((((.....(((((..(.....)..))))).))))..)))))))(((..((((.((((((((.((......)).))))))))))))..))))))))))... ( -42.30) >DroSec_CAF1 5322 120 + 1 GGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAUUAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGAUAUUGGGACUGAAAUCGCGGUGCCCGUUGAAUCCAUGGAUCAGA (((((((..(((.((((..((((.....(((((((......)).))))).))))..)))))))(((..((((.((.(((((.((......)).))))))).))))..))))))))))... ( -35.30) >DroSim_CAF1 5342 120 + 1 GGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAUCAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGAUAUUGGGACUGAAAUCGCGGUGCCCGUUGAAUCCAUGGAUCAGA (((((((.(((((........)))))...((((.((((.......(((((...))))).((((.......))))......(((((((......)))).))).)))))))))))))))... ( -36.10) >DroYak_CAF1 11551 120 + 1 GGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAACACAUUAUAAUCCUGUUUCAAGAACAGCGGGCGUAGCUGAAUAUUGGGGCUGAAAUCUCGGUGCCCAUUAAAGCCAUGGAUCAGA (((((((.((((...((..(...((((.(((((...........)))))((((...))))...))))....)..))((.(((((((((....))))).)))).)).)))))))))))... ( -36.10) >consensus GGUUCAUAGGCUAGUUUUGGAUAGUCCAAGGAUAUCAAAUUGUAAUCCUGUGUCAGGAACAGCGGACGUAGCUGGAUAUUGGGACUGAAAUCGCGGUGCCCGUUGAAUCCAUGGAUCAGA (((((((.((.....(((((.....)))))((((((.........(((((...))))).((((.......))))))))))(((((((......)))).))).......)))))))))... (-31.74 = -32.05 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:13 2006