Locus 1906

Sequence ID 2L_DroMel_CAF1
Location 5,215,562 – 5,215,681
Length 119
Max. P 0.647748
window3055

overview

Window 5

Location 5,215,562 – 5,215,681
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.21
Mean single sequence MFE -23.49
Consensus MFE -19.80
Energy contribution -20.12
Covariance contribution 0.31
Combinations/Pair 1.14
Mean z-score -1.53
Structure conservation index 0.84
SVM decision value 0.24
SVM RNA-class probability 0.647748
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5215562 119 - 22407834
CUUUACCUAUAUUUUUCAU-UUUCGUUGUUCUGACUUUAGUGGAGACUCAUUUCUGCUACCAUAACCGAGCAGCAGACUAUUAUGCCGAGUCUAUUUCGUCACCUUCUGGAUUCUAUGGC
......(((((...((((.-....(((((((......(((..((((....))))..)))........)))))))(((((.........)))))..............))))...))))). ( -22.24)
>DroSec_CAF1 4803 119 - 1
CUUUACCCAUAUUUGCCAU-UUUCAUUGUUCUAACUUUAGUGGAGACCCAUUUCUGCUACCAUAACCGAGCCGCAGACUAUUAUGCCGAGUCUAUUUCUUCACCUUAUGGAUUCUAUGGC
..............(((((-.......((((......(((..((((....))))..)))........)))).(((........))).((((((((...........)))))))).))))) ( -21.84)
>DroSim_CAF1 4823 119 - 1
CUUUACCCAUAUUUGCCAU-AUUCAUUGUUCUAACUUUAGUGGAGACCCAUUUCUGCUACCAUAACCGAGCCGCAGACUAUUAUGCCGAGUCUAUUUCUUCACCUUAUGGAUUCUAUGGC
..............(((((-(......((((......(((..((((....))))..)))........)))).(((........))).((((((((...........)))))))))))))) ( -23.54)
>DroYak_CAF1 11035 119 - 1
-UUUACUCAUAUUUCCCUUUUUUCAUGGUUCUACCUUUAGUGGAGACUCAUUUCUGCUACCAUAACCGAGCCGCAGACUAUUAUGCCGAGUCCAUUUCAUCCACUUCUGGAUUCUAUGGC
-...((((..................(((((......(((..((((....))))..)))........)))))(((........))).))))((((...(((((....)))))...)))). ( -26.34)
>consensus
CUUUACCCAUAUUUGCCAU_UUUCAUUGUUCUAACUUUAGUGGAGACCCAUUUCUGCUACCAUAACCGAGCCGCAGACUAUUAUGCCGAGUCUAUUUCUUCACCUUAUGGAUUCUAUGGC
......(((((...............(((((......(((..((((....))))..)))........)))))(((........))).((((((((...........))))))))))))). (-19.80 = -20.12 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:10 2006