Locus 1904

Sequence ID 2L_DroMel_CAF1
Location 5,210,468 – 5,210,578
Length 110
Max. P 0.918191
window3053

overview

Window 3

Location 5,210,468 – 5,210,578
Length 110
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 95.76
Mean single sequence MFE -29.67
Consensus MFE -28.95
Energy contribution -29.07
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.98
SVM decision value 1.12
SVM RNA-class probability 0.918191
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5210468 110 - 22407834
AAGUUCCAUGUUAGAAAGACAUAGAUCAAGGCCAGGAUGGCCGCAAUUACAAAAAGAGCCGUGGAAAUCGGACACAUGGCACAACCUCUCGCCAACGCGGAUGAAAACCA
....(((.((((.(..(((..........((((.....))))...............((((((...........))))))......)))..).)))).)))......... ( -25.40)
>DroSec_CAF1 87445 110 - 1
AAGUUCCAUGUCAGAAAGACAUAGAUCAAGGCCAGAAUGGCCGCAAUCACAAAAAGAGCCGUGGAAAUCGGACACAUGGCACAACGUCUCGCCAACGCGGAUGAAAGCCA
..(.((.(((((.....))))).)).)..((((.....))))((.............((((((...........))))))....((((.(((....)))))))...)).. ( -32.50)
>DroSim_CAF1 60434 110 - 1
AAGUUCCAUGUCAGAAAGACAUAGAUCAAGGCCAGAAUGGCCGCAAUCACAAGAAGAGCCGUGGAAAUCGUACACAUGGCACAACGUCUCGCCAACGCGGAUGAAAACCA
...(((.(((((.....))))).(((...((((.....))))...)))....)))..((((((...........))))))....((((.(((....)))))))....... ( -31.10)
>consensus
AAGUUCCAUGUCAGAAAGACAUAGAUCAAGGCCAGAAUGGCCGCAAUCACAAAAAGAGCCGUGGAAAUCGGACACAUGGCACAACGUCUCGCCAACGCGGAUGAAAACCA
..(.((.(((((.....))))).)).)..((((.....))))...............((((((...........))))))....((((.(((....)))))))....... (-28.95 = -29.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:08 2006