Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,208,198 – 5,208,318 |
Length | 120 |
Max. P | 0.515210 |
Location | 5,208,198 – 5,208,318 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.17 |
Mean single sequence MFE | -33.26 |
Consensus MFE | -25.40 |
Energy contribution | -26.44 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.25 |
Mean z-score | -1.50 |
Structure conservation index | 0.76 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5208198 120 + 22407834 CACUCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUGUUACCAACCUGUGGCAAAAGGUGCGCAAGUUCUACAGCGUACCGUU .........((((((((.(((.(((((((((.((((.....))))...)))))...)))).))).)))))((((....))))....)))....(((((((..........)))))))... ( -35.50) >DroSec_CAF1 85149 120 + 1 CACGCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUAUUACCAACCUGUGGCAGAAGGUGCGCAAGUUCUACAGCGUACCGUU ...(((.((...(((((.(((.(((((((((.((((.....))))...)))))...)))).))).)))))(((......)))..)))))....(((((((..........)))))))... ( -33.40) >DroSim_CAF1 58124 120 + 1 CACGCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUGUUACAAACCUGUGGCAGAAGGUGCGCAAGAUCUACAGCGUACCGUU ...........((((((.(((.(((((((((.((((.....))))...)))))...)))).))).))))))((((((((....))))))))..(((((((..........)))))))... ( -35.70) >DroEre_CAF1 88850 120 + 1 CACCCCAACUCCCCUGGUGGCAAUGAUCCAGCGGGUGUUUAACUCAUCCUCUAAGUUCAUCUUAUACAGCGUGCUCGCCAACAUCUGGCCGCCAAUUCGCAAAUUCUACAGUUUACCUUU ..............(((((((.((((...((.(((((.......))))).))....))))........(((....))).........))))))).......................... ( -24.30) >DroYak_CAF1 87281 120 + 1 CAAGACCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUGGUCACCAACCUGUGGCAGAAGGUGCGCCAGUUCUACAGCGUACCGUU ...((((((...(((((.(((.(((((((((.((((.....))))...)))))...)))).))).))))))))))).(((.....))).....(((((((..........)))))))... ( -37.40) >consensus CACGCCCACGCCGCUGUUGAAAAUGAUAAAGCGUGUGUUCAAUACCUCCUUUGAGUUCAUCUUCUACAGCGUUGUUACCAACCUGUGGCAGAAGGUGCGCAAGUUCUACAGCGUACCGUU ...........((((((.(((.(((((((((.((((.....))))...)))))...)))).))).))))))(((((((......)))))))..(((((((..........)))))))... (-25.40 = -26.44 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:05 2006