| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,206,121 – 5,206,224 |
| Length | 103 |
| Max. P | 0.971424 |
| Location | 5,206,121 – 5,206,224 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.56 |
| Mean single sequence MFE | -32.97 |
| Consensus MFE | -19.90 |
| Energy contribution | -20.05 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5206121 103 + 22407834 CAACCAAUGUUCCUAGUUUCCAGCGCGUCCUUCUCCCAAACU-CAGGGCUAUGCUGUCAACAG-UGGGCAUUGACCUCCAUUUGGACUCCGGCUUCUAAAGAGAC ....((((((((((.(((..(((((.(((((...........-.)))))..)))))..)))))-.))))))))..(((..((((((........))))))))).. ( -27.20) >DroSec_CAF1 83177 103 + 1 CAACCAAUGUCCCUAGCUUGCAGCGCGUCCUUCUCCCAAACU-CAGGGCGACGCUGUCAACAG-UGGGCAUUGACCUCCAUUUGGACUCCGGCUCCUAAAGAGUC ....((((((((((.(.((((((((((((((...........-.)))))).))))).))))))-.))))))))...(((....)))....(((((.....))))) ( -36.80) >DroSim_CAF1 56176 103 + 1 CAACCAAUGUCCCUAGUUUUCAGCGCGUCCUUCUCCCAAACU-CAGAGCGAUGCUGUCACCAG-UGGGCAUUGACCUCCAUUUGGACUCCGGCUCCUAAAGAGCC ....((((((((((.((...(((((((..((...........-.))..)).)))))..)).))-.))))))))...(((....)))....(((((.....))))) ( -31.80) >DroEre_CAF1 85356 101 + 1 UAACCAAUGUCCCCAGUUUGCAGCGCGUCCUUCUCCCAAACU-CAGGGCGAUGCUGUCAACCG-GGGGCAUAGGCCACCACUUGGACUCCGGCUCCUC--AAGCC ...((.((((((((.(((.((((((((((((...........-.)))))).)))))).))).)-))))))).))(((.....))).....((((....--.)))) ( -41.60) >DroYak_CAF1 85222 103 + 1 UGACCCAUGUCCCCAGCUUGCAGCGCGUCCUUCUCCCAAACU-CAGGGCGAUGCUGUCAACAG-GAGGCACAGGCCGCCAUUUGGACUCCGGCUCCUAAGAAGCC ........((((...(.((((((((((((((...........-.)))))).))))).)))).(-(.(((....))).))....))))...((((.......)))) ( -32.30) >DroPer_CAF1 97690 105 + 1 AGACCAAUGCUUGGGAUCAGCUAAGCGUUUUUCUCCCAAAUUACAAGACGCCGCGGCUGACCCUAUACCAUUGGCCUUUGAAUAGACCCUGGCCCCCUGACAGUU ((.((((((..((((.((((((..(((((((.............)))))))...)))))).))))...)))))).))...........(((.........))).. ( -28.12) >consensus CAACCAAUGUCCCUAGUUUGCAGCGCGUCCUUCUCCCAAACU_CAGGGCGAUGCUGUCAACAG_UGGGCAUUGACCUCCAUUUGGACUCCGGCUCCUAAAGAGCC ....((((((((.......((((((((((((.............)))))).))))))........))))))))....((....)).....((((.......)))) (-19.90 = -20.05 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:04 2006