Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,205,950 – 5,206,051 |
Length | 101 |
Max. P | 0.949020 |
Location | 5,205,950 – 5,206,051 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 83.49 |
Mean single sequence MFE | -38.57 |
Consensus MFE | -29.38 |
Energy contribution | -29.81 |
Covariance contribution | 0.43 |
Combinations/Pair | 1.35 |
Mean z-score | -3.17 |
Structure conservation index | 0.76 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5205950 101 + 22407834 AGAGAGAUCCUGGGCAGCAGAAA-AUUGCGAUUAGCAUCCUGCCAAUUUCGUGGAACAUUUUCGCAGGAUAUGAUCUCAAGUUCCUGCUGCCAGCGAUGGGC ......(((((((.((((((.((-.(((.(((((..(((((((((......))(((....)))))))))).))))).))).)).)))))))))).))).... ( -36.40) >DroSec_CAF1 83007 101 + 1 AGAGAGAUCCUGGGCAUCGGGAA-AUUGCGAUCAGCAUCCUGCCAAUUUCGUGGAACAUUUUCGCAGGAUAUGAUCUCAAGUUCCUGCUGCCAGCGAUGGGC ......(((((((.((.((((((-.(((.(((((..(((((((((......))(((....)))))))))).))))).))).)))))).)))))).))).... ( -38.10) >DroSim_CAF1 56006 101 + 1 AGAGAGAUCCUGGGCAUCGGGAA-AUUGCGAUCAGCAUCCUGCCAAUUUCGUGGAACAUUUUCGCAGGAAAUGAUCUCAAGUUCCUGCUGCCAGCGAUGGGC ......(((((((.((.((((((-.(((.(((((...((((((((......))(((....)))))))))..))))).))).)))))).)))))).))).... ( -36.50) >DroEre_CAF1 85186 102 + 1 AGAGAGCUCCUGGGCAGCACGAAAAUUGCGAUCAGUAUCCUGUGAAUUUCGUGGAACAUUUUUGCAGGAUAUGAUCUCAAGUUUCCGCUGCCUGCGAUGGCC .....((((.((((((((..((((.(((.(((((.(((((((..((..............))..)))))))))))).))).)))).)))))))).))..)). ( -38.44) >DroYak_CAF1 85053 101 + 1 AGAGAGAUCCUGGGCAGCACGAA-AUUGCGAUCAGUAUCCUGCGAAUUUCGUGGAACAUUUUUGCAGGACACAAUCUCAAGUUCCCGCUGCUGGCGAUGGUC ......(((.(.((((((..(((-.(((.(((..((.(((((((((..............))))))))).)).))).))).)))..)))))).).))).... ( -31.54) >DroAna_CAF1 86149 99 + 1 AAAGAGAACUU--GCAGCAGGGG-AGUGUGUUCGGGGUCCUGCAAAUUUCGUGGAACAUUUUUGCAGGGCCAGAACACAAAUCCCUGCUGCCAUCAAAUGGC ...........--((((((((((-..(((((((..(((((((((((..............))))))))))).)))))))..))))))))))........... ( -50.44) >consensus AGAGAGAUCCUGGGCAGCAGGAA_AUUGCGAUCAGCAUCCUGCCAAUUUCGUGGAACAUUUUCGCAGGAUAUGAUCUCAAGUUCCUGCUGCCAGCGAUGGGC ............(((((((((((...((.(((((...((((((.((..............)).))))))..))))).))..))))))))))).......... (-29.38 = -29.81 + 0.43)
Location | 5,205,950 – 5,206,051 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 83.49 |
Mean single sequence MFE | -36.08 |
Consensus MFE | -29.17 |
Energy contribution | -29.68 |
Covariance contribution | 0.51 |
Combinations/Pair | 1.34 |
Mean z-score | -3.24 |
Structure conservation index | 0.81 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5205950 101 - 22407834 GCCCAUCGCUGGCAGCAGGAACUUGAGAUCAUAUCCUGCGAAAAUGUUCCACGAAAUUGGCAGGAUGCUAAUCGCAAU-UUUCUGCUGCCCAGGAUCUCUCU ....(((.(((((((((((((.(((.(((..((((((((.((..((.....))...)).))))))))...))).))).-))))))))).)))))))...... ( -38.00) >DroSec_CAF1 83007 101 - 1 GCCCAUCGCUGGCAGCAGGAACUUGAGAUCAUAUCCUGCGAAAAUGUUCCACGAAAUUGGCAGGAUGCUGAUCGCAAU-UUCCCGAUGCCCAGGAUCUCUCU ....(((.((((((.(.((((.(((.(((((((((((((.((..((.....))...)).)))))))).))))).))).-)))).).)).)))))))...... ( -35.50) >DroSim_CAF1 56006 101 - 1 GCCCAUCGCUGGCAGCAGGAACUUGAGAUCAUUUCCUGCGAAAAUGUUCCACGAAAUUGGCAGGAUGCUGAUCGCAAU-UUCCCGAUGCCCAGGAUCUCUCU ....(((.((((((.(.((((.(((.(((((..((((((.((..((.....))...)).))))))...))))).))).-)))).).)).)))))))...... ( -32.80) >DroEre_CAF1 85186 102 - 1 GGCCAUCGCAGGCAGCGGAAACUUGAGAUCAUAUCCUGCAAAAAUGUUCCACGAAAUUCACAGGAUACUGAUCGCAAUUUUCGUGCUGCCCAGGAGCUCUCU (((..((...(((((((((((.(((.((((((((((((......................))))))).))))).))).)))).)))))))..)).))).... ( -33.45) >DroYak_CAF1 85053 101 - 1 GACCAUCGCCAGCAGCGGGAACUUGAGAUUGUGUCCUGCAAAAAUGUUCCACGAAAUUCGCAGGAUACUGAUCGCAAU-UUCGUGCUGCCCAGGAUCUCUCU ........((.((((((.(((.(((.(((((((((((((....................))))))))).)))).))).-))).))))))...))........ ( -34.55) >DroAna_CAF1 86149 99 - 1 GCCAUUUGAUGGCAGCAGGGAUUUGUGUUCUGGCCCUGCAAAAAUGUUCCACGAAAUUUGCAGGACCCCGAACACACU-CCCCUGCUGC--AAGUUCUCUUU ...........(((((((((...(((((((.((.((((((((..((.....))...))))))))..)).)))))))..-.)))))))))--........... ( -42.20) >consensus GCCCAUCGCUGGCAGCAGGAACUUGAGAUCAUAUCCUGCAAAAAUGUUCCACGAAAUUGGCAGGAUGCUGAUCGCAAU_UUCCUGCUGCCCAGGAUCUCUCU .....((...(((((((((((..((.(((((((((((((.((..((.....))...)).)))))))).))))).))...)))))))))))..))........ (-29.17 = -29.68 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:03 2006