Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 73,242 – 73,334 |
Length | 92 |
Max. P | 0.878206 |
Location | 73,242 – 73,334 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.84 |
Mean single sequence MFE | -15.81 |
Consensus MFE | -5.48 |
Energy contribution | -6.52 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.08 |
Mean z-score | -2.01 |
Structure conservation index | 0.35 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 73242 92 - 22407834 ----CUGCUUUAAAAUCGCAGUGGCGCCAUUAUACACAACUCAUUUAA-ACUACAUAGUGAAGUGCCUGAACUUAA-----UUAAAAC-AACAGUGGCGCCAU----------------- ----((((.........))))((((((((((...(((...........-........)))((((......))))..-----.......-...)))))))))).----------------- ( -23.41) >DroSec_CAF1 45368 92 - 1 ACUAUUGGUUUAAUAUCGCAGA---GCCACUAUACACAACUCAUUUAA-A--ACAUAGUGAAGUGACUAAACUCAAC----UUAAAAC-UACAGUGGCGCCAU----------------- .....((((......((...))---((((((.........(((((...-.--....)))))(((......)))....----.......-...)))))))))).----------------- ( -14.00) >DroSim_CAF1 47796 92 - 1 ACUAUUGGUUUAAUAUCGCAGA---GCCACUAUACACAACUCAUUUAA-A--ACAUAGUGAAGUGACUAAACUCAAC----UUAAAAC-UACAGUGGCGCCAU----------------- .....((((......((...))---((((((.........(((((...-.--....)))))(((......)))....----.......-...)))))))))).----------------- ( -14.00) >DroEre_CAF1 52185 95 - 1 ACAUUUGCUUUAAUAACACAGUACCACCACUAUAGCCAAUUCACUUAAAA--CCAUAAUGAA-CCACAAAACUCAACUUAUUUAAAAC-AACAGUGGGA--------------------- ..........................(((((..((........)).....--......(((.-.........))).............-...)))))..--------------------- ( -3.90) >DroYak_CAF1 45882 117 - 1 ACAUAUGCUUUAAUAAAACAGUGACACCACUAUACAAAAAUCAUUUAA-A--CAUUAGUGAAGCCACUAAACCCAUCUAAUUUAAAAAAAACAGUGGCGGCACUAUACUCACAUUAAAGC ......((((((((.....((((....)))).................-.--...(((((..((((((........................))))))..))))).......)))))))) ( -23.76) >consensus ACAAUUGCUUUAAUAUCGCAGU__CGCCACUAUACACAACUCAUUUAA_A__ACAUAGUGAAGUGACUAAACUCAAC____UUAAAAC_AACAGUGGCGCCAU_________________ .........................((((((.........(((((...........))))).((......))....................))))))...................... ( -5.48 = -6.52 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:25 2006