Locus 1899

Sequence ID 2L_DroMel_CAF1
Location 5,202,392 – 5,202,489
Length 97
Max. P 0.534290
window3046

overview

Window 6

Location 5,202,392 – 5,202,489
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 85.34
Mean single sequence MFE -22.72
Consensus MFE -18.17
Energy contribution -18.45
Covariance contribution 0.28
Combinations/Pair 1.21
Mean z-score -1.69
Structure conservation index 0.80
SVM decision value 0.00
SVM RNA-class probability 0.534290
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5202392 97 + 22407834
AGUGGCAUAUUUGGGAAUAUACCUUCCCAAUUGUGUCUCAAAUACUCCAAAAACAACUAUGUAAUAGGGACGAACGGCAUCCUGAAUAGUG-CAUCAU
.(.((((((.(((((((......))))))).)))))).)................(((((......((((.(.....).))))..))))).-...... ( -23.40)
>DroSec_CAF1 79570 97 + 1
AGUGGCAUAUUUGGGAAUAUACCUUCCCAAUUGUGUCUCAAAUACUCCAAAAUCAACUAUGUAAUAGGGACGAACGGCAUCCUGAAUAGUG-CAUCAU
.(.((((((.(((((((......))))))).)))))).)................(((((......((((.(.....).))))..))))).-...... ( -23.40)
>DroSim_CAF1 52459 97 + 1
AGUGGCAUAUUUGGGAAUGUACCUUCCCAAUUGUGUCUCAAAUACUCCAAAAAUAACUAUGUAAUAGGGGCGAACGGCAUCCUGAAUAGUG-CAUCAU
.(.((((((.(((((((......))))))).)))))).)................(((((....(((((((.....)).))))).))))).-...... ( -26.50)
>DroEre_CAF1 81687 97 + 1
AGUGGCAUAUUUGGGUAUAUCCCUGCCCAUUUGUGUCUCAAAUACUCCCAUAACAACUUUGUAGUAGGGAAGAACGGCAUCCUGAAUAGUG-CAUUAU
.(.((((((..((((((......))))))..)))))).)......((((((.(((....))).)).))))......((((........)))-)..... ( -26.80)
>DroYak_CAF1 81439 97 + 1
AGUGGCAUAUUUGAGAAUAGCCCUUCCCAAUUGUGUCUCAAAUACUCCGAAAACAACUAUGCAAUAGGGACGAACGGCAUCCUGAAUAGUG-UAUCAU
..(((..(((((((((...((...........)).)))))))))..)))...(((.((((......((((.(.....).))))..))))))-)..... ( -18.10)
>DroAna_CAF1 82647 91 + 1
AGUGGCAUAUAUCAGAAUCUCUAAUCCGAUUUGUGUCUCAAAUGCUCCCAAA----CUAAGC---AAAGAUGAACGGCAUCCUGUAUAGUUCCAUCAU
.(.((((((.(((.((........)).))).)))))).)...((((......----...)))---)..(((((((.((.....))...))).)))).. ( -18.10)
>consensus
AGUGGCAUAUUUGGGAAUAUACCUUCCCAAUUGUGUCUCAAAUACUCCAAAAACAACUAUGUAAUAGGGACGAACGGCAUCCUGAAUAGUG_CAUCAU
.(.((((((.(((((((......))))))).)))))).)................(((((......((((.(.....).))))..)))))........ (-18.17 = -18.45 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:01 2006