Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,201,603 – 5,201,717 |
Length | 114 |
Max. P | 0.574083 |
Location | 5,201,603 – 5,201,717 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.42 |
Mean single sequence MFE | -40.84 |
Consensus MFE | -25.65 |
Energy contribution | -25.57 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.38 |
Mean z-score | -1.44 |
Structure conservation index | 0.63 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5201603 114 - 22407834 UGUUGUGCGUCCUGCAACUUCUUCUCUAGACUCUCCAGACGUUGGAGCACCGCUUUCGGCUCCGCUUUGGAGGUCUGUUGAUUCUCUGCGCUGGGCAAUUGUUCCAAAGCCUUU ........((((((((......((..(((((.(((((((.((.(((((..........)))))))))))))))))))..)).....))))..)))).................. ( -34.10) >DroSec_CAF1 78771 114 - 1 UGCUGGGCGUCCUGCAACUUCUUCUCUAGGCUCUCCAGACGCUGGAGCACCGCUUUCGGCUCCGCCUUGGAGGUCUGUUGGUCCUCCGCGCUGGGCAAUUGUUCCAAAGUCUUU ((((.(((((.................((((.((((((...))))))..(((....)))....)))).(((((.(.....).)))))))))).))))................. ( -37.50) >DroEre_CAF1 80908 114 - 1 UGCUGGGCGUCCUGCAGCUUCUUCUCCAGGCUCUCCAGUCGUUGGAGCACAGCUUUGGGCUGCGCCUUUGAGGUCUGCUGAUCCUCCACGCUUGGCAAUUGUUCCAGGGCCUUU (((..(((((....((((..((((...((((.((((((...))))))..((((.....)))).))))..))))...)))).......)))))..)))................. ( -40.40) >DroYak_CAF1 80651 114 - 1 UGUUGGGCGUCCUGCAGCUUCUUUUCCAGGCUCUCCAAUCGUUGGAGCACCGCUUUGGGCUGCGCCUUGGAGGUCUGCUGAUCCUCCACGCUUGGCAGUUGUUCCAAAGCCUUU (((..(((((...(((((((........((..(((((.....)))))..)).....))))))).....(((((((....)).))))))))))..)))................. ( -41.52) >DroMoj_CAF1 139326 114 - 1 UGCUCGGCCUGCUGCAGCUUGCGCUCUAGUCCAUCCAGGCGCUGGAGCACAGCCUUCGGCUCGUUGCUAUCUGCCAGCUGAUCCUCAGCGCUGGGCACCUGUUCGAGUGCCUUC .((..(((.....(((((.((.((((((((((.....)).)))))))).))(((...)))..))))).....))).((((.....)))))).((((((........)))))).. ( -46.10) >DroAna_CAF1 81853 114 - 1 UGUUGGGCAUCCUGCAGCUUCUUCUCCAGGCUCUCCAAUCGCUGGAUGACCACUUUUGGGUCAGCCUUGGAGCUCUGCUGAUCCUCCAGGCUGGGCAGCUGCUCGAGGGCCUUU ....((((.((..((((((.....(((((((..((((.....))))(((((.(....))))))))).))))((((.(((.........))).))))))))))..))..)))).. ( -45.40) >consensus UGCUGGGCGUCCUGCAGCUUCUUCUCCAGGCUCUCCAGUCGCUGGAGCACCGCUUUCGGCUCCGCCUUGGAGGUCUGCUGAUCCUCCACGCUGGGCAAUUGUUCCAAAGCCUUU ((((.(((((....((((....((((((((..((((((...))))))....((.....)).....))))))))...)))).......))))).))))................. (-25.65 = -25.57 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:00 2006