Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,194,122 – 5,194,242 |
Length | 120 |
Max. P | 0.500000 |
Location | 5,194,122 – 5,194,242 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.56 |
Mean single sequence MFE | -33.84 |
Consensus MFE | -18.50 |
Energy contribution | -19.45 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.45 |
Mean z-score | -2.08 |
Structure conservation index | 0.55 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5194122 120 + 22407834 GUUCCCGACUUAUCUGCCGUAACUUCCGCAGACUACGAUCAAUACACCACUCUGUACCAAUCCCUGAGCAAUGAUAUCUCACAUCACUAUGUGAAAAUGACACAGCUUUCGGGAAUAGCC ((((((((....(((((.(......).)))))....(((...((((......))))...)))...((((..((.(((.((((((....))))))..))).))..)))))))))))).... ( -27.50) >DroVir_CAF1 111354 120 + 1 GUGCCAGAUCUGUCGGCGGUGACCUCUGCCGAUUACGAUCAGUAUGCGACGCUCUAUCAAUCCCUUAGCAAUGACAUCUCGCAUCAUUAUGUGAAGAUGACGCAGCUCUCGGGCAUUGCU (((((.((((.((((((((......))))))))...))))(((.((((..(((.............))).....((((((((((....))))).))))).)))))))....))))).... ( -40.82) >DroGri_CAF1 102901 120 + 1 GUGCCCGAUCUGUCGGCAGUUACCUCCGCCGACUAUGAUCAGUAUGCGACGCUCUAUCAAUCCCUGAGCAAUGACAUCUCCCAUCAUUAUGUAAAAAUGACGCAGCUCUCGGGUAUUGCC ((((((((((.((((((.(......).))))))...))))(((.((((..((((...........))))..............(((((.......))))))))))))...)))))).... ( -37.40) >DroWil_CAF1 79120 120 + 1 GUACCCGAUCUUUCAGCCGUUACAUCGGCCGAUUACGAUCAGUACACAACGCUUUAUCAAUCCCUGAGCAAUGAUAUUUCCCAUCAUUAUGUAAAGAUGACUCAACUUUCCGGUAUAGCA ((((..((((..((.((((......)))).))....)))).)))).....(((.((((...........((((((.......))))))..(.((((.((...)).)))).))))).))). ( -25.70) >DroMoj_CAF1 131352 120 + 1 GUGCCAGAUCUUUCGGCGGUUACAUCCGCCGACUAUGAUCAAUAUGCCACGCUCUACCAAUCCCUGAGCAACGACAUCUCGCACCACUAUGUCAAGAUGACGCAGCUGUCGGGCAUAGCC ..((..((((..(((((((......)))))))....))))..((((((..((((...........))))..(((((.((.((..((((......)).))..)))).))))))))))))). ( -43.10) >DroAna_CAF1 74385 120 + 1 GUGCCUGAUCUAUCGGCUGUGACCUCGGCGGACUACGACCAGUACACCACGCUCUACCAAUCCCUGAGCAACGACAUCUCCCACCACUACGUGAAGAUGACCCAGCUUUCUGGAAUUGCC ((((.((.((((((.((((......)))).)).)).)).)))))).....((((...........)))).....(((((..(((......))).)))))..((((....))))....... ( -28.50) >consensus GUGCCCGAUCUAUCGGCCGUUACCUCCGCCGACUACGAUCAGUACACCACGCUCUACCAAUCCCUGAGCAAUGACAUCUCCCAUCACUAUGUGAAGAUGACGCAGCUUUCGGGAAUAGCC (((((.((((..(((((((......)))))))....)))).........................((((..((.(((((..((......))...))))).))..))))...))))).... (-18.50 = -19.45 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:54 2006