Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,191,559 – 5,191,670 |
Length | 111 |
Max. P | 0.573565 |
Location | 5,191,559 – 5,191,670 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.31 |
Mean single sequence MFE | -39.83 |
Consensus MFE | -28.48 |
Energy contribution | -28.18 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.40 |
Mean z-score | -1.32 |
Structure conservation index | 0.72 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5191559 111 - 22407834 CUCGUCUGCACUGCAGUCUCAUCUAAUUUGGGUUGAUGCUGUGGUGAAGUCUGCACGGAUUUAAUAUCCUGCUCGAC---UUCCGAUUUUUCAGUGGGCGAUGGAAUACGCGGU .(((((..(((..((((.(((.((......)).))).))))..))((((((.(((.((((.....)))))))..)))---)))..........)..)))))............. ( -38.50) >DroSec_CAF1 68725 111 - 1 CUCGUCUGCACUGCAGUUUCAUCCAGUUUGGGUUGAUGCUGUGGUGAAGUCUGCACGGAUUUAAUAUCCUGUUCGAC---UUCCGAUUUUUCCGUGGGCGAGGGAAUACGCGGU ((((((..(((..((((.((((((.....))).))).))))..))((((((.(((.((((.....)))))))..)))---)))..........)..))))))............ ( -42.40) >DroEre_CAF1 71023 111 - 1 CUCGUCUGCACUGCAGUCUCGUCCAGCUUGGGUUGAUGCUGCGGCGAAGUUUGCACGGAUUUAAUAUCCUGUUCGAC---UUCCGGCUUUUCAGUGGGCGAGGGAACACGCGGU ((((((..(.(((((((.(((.((......)).))).))))))).((((((.(((.((((.....)))))))..)))---)))..........)..))))))............ ( -40.40) >DroYak_CAF1 70484 111 - 1 CUCGUCUGCACUGCAGUCUCAUCCAGGGUGGGUUGAUGCUGUGGCGAAGUCUGCACGGACUUUAUAUCCUGUUCGAC---UUCCGAUUUUUCAGUGGGCGAGGGAACUCGUGGU ((((((..(.(..((((.((((((.....))).))).))))..).((((((.(((.(((.......))))))..)))---)))..........)..))))))............ ( -38.70) >DroAna_CAF1 71804 114 - 1 CUCGUCUGCACAGCGAUCUCAUCCAAUGUGGGCUGGUGUUGCGGCGAUGUCUGUACGGAUUUGAUAUCCUGCUCUACCGGUUCGGGCGCUUCAGUGGGCGAGGGAACGCGUGGU ........(((.(((.((((......(.((((((((((..((((.((((((...........))))))))))..)))))))))).)((((......)))).)))).)))))).. ( -42.60) >DroPer_CAF1 81995 111 - 1 CUCGUCUGCACUGACAUCUCAUCCAGUUUCGGUUGAUGCUGUGGCGAUGUCUGCACGGACUUGAUGUCCUGCUCAAU---CUUCGCGGCUUCUACAGGCGUUGCGGCACGUGGU (.(((((((((((.....(((.((......)).))).(((((((.(((....(((.((((.....)))))))...))---).))))))).....)))....))))).))).).. ( -36.40) >consensus CUCGUCUGCACUGCAGUCUCAUCCAGUUUGGGUUGAUGCUGUGGCGAAGUCUGCACGGAUUUAAUAUCCUGCUCGAC___UUCCGAUUUUUCAGUGGGCGAGGGAACACGCGGU (((((((((.(((((((.(((.((......)).))).))))))).((((...(((.((((.....)))))))(((........)))..)))).)))))))))............ (-28.48 = -28.18 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:53 2006