Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,190,903 – 5,191,002 |
Length | 99 |
Max. P | 0.788376 |
Location | 5,190,903 – 5,191,002 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 76.63 |
Mean single sequence MFE | -33.35 |
Consensus MFE | -21.00 |
Energy contribution | -23.92 |
Covariance contribution | 2.92 |
Combinations/Pair | 1.37 |
Mean z-score | -1.53 |
Structure conservation index | 0.63 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5190903 99 - 22407834 GAGUUGAGUGGCGGCACGCAGGUCGAUUGGGCCAGAAGCUGGUUGUUUCUCAAUAACGGGCUCUUCUGGCUUUUCCUCAGUCUGCUCAACAAUUGCAAU ..((((((((....)))(((((..((..((((((((((((.((((((....)))))).))))..))))))))....))..))))))))))......... ( -38.20) >DroSec_CAF1 68072 99 - 1 GAGUUGAGUGGCGGCACGCAGGUCGAUUUGGCCAGGAGCUGGUUGUUUCUCAAGAACGGGCUCUUCUGGCUUUUGCUCAGUCUGCUCAACAAUUUCAAU ..((((((((....)))(((((..((...(((((((((((.(((.((....)).))).)))))..)))))).....))..))))))))))......... ( -36.40) >DroSim_CAF1 40872 99 - 1 GAGUUGAGUGGCGGCACGCAGGUCGAUUUGGCCAGGAGCUGGUUGUAUCUCAAGAACGGGCUCUUCUGGCUCUUGCUCAGUCUGCUCAACAAUUCCAAU ..((((((((((.....(((((.......(((((((((((.(((.(......).))).)))))..)))))))))))...))).)))))))......... ( -36.41) >DroEre_CAF1 70385 84 - 1 GAGUUGCGUGGCGGCUCGCAGAUCGAUUUGACCAGGAGCUGGUUGUUUCCCAACAACGAGCUCUUCGGG---------------CUCAACAAUGUCAGU (((((((...)))))))...(((....((((((.((((((.((((((....)))))).))))))...))---------------.))))....)))... ( -31.00) >DroYak_CAF1 69843 99 - 1 GAGUUGAGUGGCGGCACGCAAGUCGAUUUGACCAGGUGUUGGUUGUGUACCCACAACGAGUUCUUCUGGCUUUUGGUCAGUCUGCUCAACAAUGUCAAU ..((((((..(((((......))))..(((((((((.(((.((((((....)))))).((.....))))).))))))))).)..))))))......... ( -32.70) >DroAna_CAF1 71181 99 - 1 GAGCUGAGUGGCCACGCGCAGGUCAGUCUGGCUGGGAGCGGGAUUCUUCUCCAAAAUAGUGUCUACAGGUUUCUGUUCAGUCGUUUCAACGGUUACAAU .......((((((..((.((((....))))))..(((((((((......))).......((...((((....)))).))..))))))...))))))... ( -25.40) >consensus GAGUUGAGUGGCGGCACGCAGGUCGAUUUGGCCAGGAGCUGGUUGUUUCUCAACAACGGGCUCUUCUGGCUUUUGCUCAGUCUGCUCAACAAUUUCAAU ..(((((((((((((......))))....(((((((((((.((((((....)))))).)))))..))))))..........)))))))))......... (-21.00 = -23.92 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:51 2006