Locus 189

Sequence ID 2L_DroMel_CAF1
Location 573,220 – 573,340
Length 120
Max. P 0.755810
window282

overview

Window 2

Location 573,220 – 573,340
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.67
Mean single sequence MFE -46.73
Consensus MFE -29.00
Energy contribution -32.90
Covariance contribution 3.90
Combinations/Pair 1.10
Mean z-score -2.23
Structure conservation index 0.62
SVM decision value 0.49
SVM RNA-class probability 0.755810
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 573220 120 - 22407834
CCCGCCACUUGGGUGCGGGUCAAAAUGAUCGACUUUGCUCAUGUUUACCCGGCAGAACAGGGCUUGCCGGACGAGAACUACAUGUUCGGUCUCCAGAGCCUGAUAGAAGUCGUCCAAUCA
(((((.((....)))))))......((..(((((((..((.(((((........)))))((((((...((((..((((.....)))).))))...))))))))..)))))))..)).... ( -40.80)
>DroPse_CAF1 13245 120 - 1
CCCUCCGAGUGGAUACGCGUGCGCAUGAUUGACUUUGCUCAUGUCUAUCCUGCGGAGGAUGGCCAACCCGAUGAGAAUUACAUGUUCGGACUGCAGAGCCUCAUCGAGGUGGUCCGAUCC
.((((((...(((((.(((((.(((..........))).))))).)))))..)))))).((((((.(((((((((........((((........))))))))))).))))).))).... ( -49.70)
>DroPer_CAF1 13229 120 - 1
CCCUCCGAGUGGAUACGCGUGCGCAUGAUUGACUUUGCUCAUGUCUAUCCUGCGGAGGAUGGCCAACCCGAUGAGAAUUACAUGUUCGGACUGCAGAGCCUCAUCGAGGUGGUCCGAUCC
.((((((...(((((.(((((.(((..........))).))))).)))))..)))))).((((((.(((((((((........((((........))))))))))).))))).))).... ( -49.70)
>consensus
CCCUCCGAGUGGAUACGCGUGCGCAUGAUUGACUUUGCUCAUGUCUAUCCUGCGGAGGAUGGCCAACCCGAUGAGAAUUACAUGUUCGGACUGCAGAGCCUCAUCGAGGUGGUCCGAUCC
.((((((...(((((.(((((.(((..........))).))))).)))))..))))))..((((.(((((((((((((.....))))((.((....)))))))))).)))))))...... (-29.00 = -32.90 +   3.90) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:47 2006