Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 573,220 – 573,340 |
Length | 120 |
Max. P | 0.755810 |
Location | 573,220 – 573,340 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.67 |
Mean single sequence MFE | -46.73 |
Consensus MFE | -29.00 |
Energy contribution | -32.90 |
Covariance contribution | 3.90 |
Combinations/Pair | 1.10 |
Mean z-score | -2.23 |
Structure conservation index | 0.62 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 573220 120 - 22407834 CCCGCCACUUGGGUGCGGGUCAAAAUGAUCGACUUUGCUCAUGUUUACCCGGCAGAACAGGGCUUGCCGGACGAGAACUACAUGUUCGGUCUCCAGAGCCUGAUAGAAGUCGUCCAAUCA (((((.((....)))))))......((..(((((((..((.(((((........)))))((((((...((((..((((.....)))).))))...))))))))..)))))))..)).... ( -40.80) >DroPse_CAF1 13245 120 - 1 CCCUCCGAGUGGAUACGCGUGCGCAUGAUUGACUUUGCUCAUGUCUAUCCUGCGGAGGAUGGCCAACCCGAUGAGAAUUACAUGUUCGGACUGCAGAGCCUCAUCGAGGUGGUCCGAUCC .((((((...(((((.(((((.(((..........))).))))).)))))..)))))).((((((.(((((((((........((((........))))))))))).))))).))).... ( -49.70) >DroPer_CAF1 13229 120 - 1 CCCUCCGAGUGGAUACGCGUGCGCAUGAUUGACUUUGCUCAUGUCUAUCCUGCGGAGGAUGGCCAACCCGAUGAGAAUUACAUGUUCGGACUGCAGAGCCUCAUCGAGGUGGUCCGAUCC .((((((...(((((.(((((.(((..........))).))))).)))))..)))))).((((((.(((((((((........((((........))))))))))).))))).))).... ( -49.70) >consensus CCCUCCGAGUGGAUACGCGUGCGCAUGAUUGACUUUGCUCAUGUCUAUCCUGCGGAGGAUGGCCAACCCGAUGAGAAUUACAUGUUCGGACUGCAGAGCCUCAUCGAGGUGGUCCGAUCC .((((((...(((((.(((((.(((..........))).))))).)))))..))))))..((((.(((((((((((((.....))))((.((....)))))))))).)))))))...... (-29.00 = -32.90 + 3.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:47 2006