Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,184,683 – 5,184,773 |
Length | 90 |
Max. P | 0.608550 |
Location | 5,184,683 – 5,184,773 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 75.17 |
Mean single sequence MFE | -21.83 |
Consensus MFE | -10.36 |
Energy contribution | -10.48 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -1.83 |
Structure conservation index | 0.47 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5184683 90 + 22407834 GACGGCAUUACAGAAACUGUAGUGACAACCACGACGACCACGAU------------------AACCGAUCGCGUUGUAGAA---AAGACUGAACCAGAUGCAUCGUCAUUA (((((((((((((...))))))))......((((((....((((------------------.....))))))))))....---..................))))).... ( -20.60) >DroVir_CAF1 101610 105 + 1 GACAUCAUUACUGAAACUGUAGUGAAAACGACCACGAUUAC---AGAAUCAAGCAAAUUGAUAACUGAUCACGUUGUAGAU---AAGACUGAACCAGAAUCAUCGUCAAUU (((.(((((((.......)))))))..(((((...(((((.---...(((((.....)))))...)))))..))))).(((---.(..(((...)))..).)))))).... ( -20.30) >DroGri_CAF1 92915 105 + 1 GACAUCAUUACUGAAACUGUAGUGAAAACGACGACGAUUAC---UGAAUCAAGCAAAUUGAUAACAGAUCACGUUGUAGAU---AAGACUGAAACAGAGACAUCGUCAAAU (((.(((((((.......)))))))..((((((..(((..(---((.(((((.....)))))..)))))).)))))).(((---....(((...)))....)))))).... ( -21.90) >DroWil_CAF1 69559 108 + 1 GACAUCAUUACAGAAACUGUAGUGACAACGACUACGAUUAC---AGAGUCAAGUAAAUUGACAUCUGAUCAAAUUGUAGAAGAUAAGACUGAAACAGAGACAUCGUCAUUU (((.(((((((((...)))))))))......((((((((.(---((((((((.....))))).))))....))))))))..(((....(((...)))....)))))).... ( -28.90) >DroMoj_CAF1 121070 105 + 1 GACAUCAUUACUGAAACUGUAGUGAAAACGACCACGGUUAC---AGAAUCAAGCAAAUUGAUAACUGAUAACGCUGUAGAU---AAGACUGAACCAGAAGCAUCGUCAAUU (((.(((((((.......)))))))..........((((.(---((.(((((.....)))))...........((......---.)).))))))).........))).... ( -20.00) >DroAna_CAF1 65085 87 + 1 GA---CAUUACAGAAACUGUAGUGACCACCACGACGACCACGAU------------------UACGGAUCGCGUUGUUGAA---AAGACUGAACCAGAAGCAUCGUCAUUA ..---((((((((...))))))))........(((((...((((------------------.(((.....))).))))..---....(((...))).....))))).... ( -19.30) >consensus GACAUCAUUACAGAAACUGUAGUGAAAACGACGACGAUUAC___AGAAUCAAGCAAAUUGAUAACUGAUCACGUUGUAGAA___AAGACUGAACCAGAAGCAUCGUCAAUU (((.(((((((.......)))))))......(.(((((.........(((((.....)))))..........))))).).........................))).... (-10.36 = -10.48 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:45 2006