| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,183,939 – 5,184,042 |
| Length | 103 |
| Max. P | 0.854856 |
| Location | 5,183,939 – 5,184,042 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.31 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -14.15 |
| Energy contribution | -13.82 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5183939 103 + 22407834 ACAACAUAUGUGACCACAACGGUGACUACACAUAAGGAUACAUCUAUCGUGGAGAAU------------GAA---UCGCCAGCAACAUCUUAUGUGUCCACUGUGGUAACCAGCCAUA .........((.((((((...(((...(((((((((((((....)))).(((.((..------------...---)).))).......))))))))).))))))))).))........ ( -25.40) >DroPse_CAF1 79181 115 + 1 ACCACCUAUGUGACUACGACAGUAACCACGCAUAAGGAUGCACCAAUUGUAGAGGAUAUGCAGAAGGCCGAA---CCGGAAACAACAUCAUAUGUAUCCACGGUGGUAACCACACAUA ((((((((((((..(((....)))....)))))).(((((((((..(((((.......)))))..)).....---..(....).........)))))))..))))))........... ( -30.80) >DroSec_CAF1 61171 103 + 1 ACAACAUAUGUGACCACAACGGUGACCACACAUAAGGAUACACCUAUCGUGGAGAAU------------GAA---UCCCCACCAACAUCUUAUGUGUCCACUGUGGUUACCAGCCAUA .........(((((((((...(((...(((((((((((((....))))((((.((..------------...---)).))))......))))))))).))))))))))))........ ( -31.80) >DroEre_CAF1 63505 106 + 1 ACAACAUAUGUCACCACAACGGUGACCACACAUAAGGAUACACCCAUUGUGGAGGAU------------GAACAUCCGCCUGCAAAAUCUUAUGUGUCCACCGUGGUAACCAGCCAUA .........((((((.....)))))).((((((((((......)).(((..(.((((------------....))))..)..)))....)))))))).....(((((.....))))). ( -32.30) >DroYak_CAF1 62542 103 + 1 ACAACAUAUGUGACCACAACGGUGACCACACAUAAGGAUACACCUAUUGUGGAGGAU------------GAA---UCGCCAGCAACAUCUUAUGUGUCCACUGUGGUAACCAGCCAUA ........(((....)))..(((.((((((.....(((((((((......))(((((------------(..---.(....)...)))))).)))))))..)))))).)))....... ( -26.90) >DroAna_CAF1 64278 103 + 1 ACAACCUAUGUAACAACUACUGUAACUACCCACAAGGAUGCAUCCAUCGUGGAUGAU------------GAG---CCUCCUGCAACAUCCUAUGUAUCGACUGUUGUAACCAGCCACA (((((....((.(((.....))).)).....((((((((((((((.....)))))..------------..(---(.....))..)))))).))).......)))))........... ( -20.80) >consensus ACAACAUAUGUGACCACAACGGUGACCACACAUAAGGAUACACCUAUCGUGGAGGAU____________GAA___CCGCCAGCAACAUCUUAUGUGUCCACUGUGGUAACCAGCCAUA .........((.(((((....(((....)))....(((((((((......)).................(......)...............)))))))...))))).))........ (-14.15 = -13.82 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:44 2006