Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,172,822 – 5,172,914 |
Length | 92 |
Max. P | 0.523265 |
Location | 5,172,822 – 5,172,914 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 73.28 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -8.10 |
Energy contribution | -8.52 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.25 |
Mean z-score | -1.93 |
Structure conservation index | 0.38 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5172822 92 + 22407834 UUCAAACAAACAUACUCAGUGCCGAUAGCACUUUGUGGUCUUCAAUUGUCCGACAAGGUGCCCAGGAACCUAUUACCAAAAUGACACAAUCU--- ..................(((.((...(((((((((((.(.......).)).)))))))))..((....))..........)).))).....--- ( -18.10) >DroPse_CAF1 66112 95 + 1 UAGAACCGAAUCUUCCGCAGACCAGUAAUGCAUUAUGGUCUUCGAUCGUGCGACAAGGGGUACAGGAACCCUUCACGAAGAUAACGCAACAAAGC .........((((((((.((((((...........)))))).))...(((.....((((((......)))))))))))))))............. ( -23.60) >DroSec_CAF1 55943 92 + 1 UUCAAACAAACACACUCAGUUCCGAUAGCACUUUGUGGUCUUCAAUUCUCCGACAAGGUGUCCAGGAACCUAUUACAAAACUGACAAAAUCU--- ..................(((((....(((((((((((...........)).)))))))))...))))).......................--- ( -18.70) >DroEre_CAF1 55028 92 + 1 UUCAUACGAACAUACCCAGUUCCGAUAGCACUUUGUGGUCUUCAAUUGUCCGACAAGGUGUUCAGGAACCUAUUACAAAAAUUACUCAAUCU--- ..................(((((...((((((((((((.(.......).)).))))))))))..))))).......................--- ( -21.60) >DroYak_CAF1 54808 92 + 1 CUCCUACAAACGUACCCAGUUCCGAUAGCACUUUGUGGUCGUCAAUUGUCCGACAAGGUGUUCAGGAACCCAUUACAAAAAUGACUCAACCA--- ...........(((....(((((...((((((((((((.((.....)).)).))))))))))..)))))....)))................--- ( -23.90) >DroPer_CAF1 65964 95 + 1 UAGAACCGAAUCUUCCGCAGACCAGUAAUGCAUUAUGGUCUUCGAUCGUGCGACAAGGGGUACAGGAACCCUUCACGAAGAUAACGCAACAAAGC .........((((((((.((((((...........)))))).))...(((.....((((((......)))))))))))))))............. ( -23.60) >consensus UUCAAACAAACAUACCCAGUUCCGAUAGCACUUUGUGGUCUUCAAUUGUCCGACAAGGUGUACAGGAACCCAUUACAAAAAUGACACAACCA___ .....................((....(((((((((.(............).)))))))))...))............................. ( -8.10 = -8.52 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:41 2006