Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,166,121 – 5,166,215 |
Length | 94 |
Max. P | 0.602856 |
Location | 5,166,121 – 5,166,215 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 65.28 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -11.02 |
Energy contribution | -11.26 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.45 |
Mean z-score | -1.77 |
Structure conservation index | 0.41 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5166121 94 - 22407834 GCUAGAAGACUCAUCGACGGGAAGACCGGCAUAUGCUGGCUUUUUGGGUUCUUCAGGUAUCUUCUCCGGUUCUACUACCUUCUUGGGUUCUUCG-- ....(((((((((....(((((((.(((((....)))))))))))).........((........))(((......)))....)))).))))).-- ( -27.10) >DroVir_CAF1 87968 91 - 1 AUUGCUUGACUCAUCAACGGGCAGCCCAGCAUAUGCUGGUUUCUUGGGCUCCUCGAGUUUCUGUUCCGGCUCCACAGC---CUUUGGCUCUACU-- ..((((((.........))))))(((((((....)))))...(..(((((....(((((........)))))...)))---))..)))......-- ( -24.30) >DroSim_CAF1 29098 94 - 1 GCUAGAAGAGUCAUCGACCGGAAGACCGGCAUAUGCUGGUUUUUUGGGUUCUUCAGGUUUCUUCUCCGGUUCUACUACCUUCUUUGGUUCCUCG-- ....((.((..((..(((((((((((((((....)))))))))))))........((........))(((......))).))..))..)).)).-- ( -29.60) >DroWil_CAF1 52990 93 - 1 GUUUGUUGAAUCAUCGACAGGCAGUCCUGCAUACGCUGGUUUCUUUGGCUCCUCUGGUUUAUUUUCAGACUCGGCAGG---UUUAGAUUCCUCAAU (((((((((....)))))))))...(((((....((..(.....)..))...(((((.......)))))....)))))---............... ( -25.40) >DroAna_CAF1 50883 73 - 1 GCUGGAGGAAUCGUCAACAGGCAGACCGGCGUAGGCUGGUUUCUUUGGCUCCUCUGGCUUU---------------------UUGAUUUCCUCA-- ((..(((((...(((((..((.((((((((....))))))))))))))))))))..))...---------------------............-- ( -29.50) >consensus GCUAGAAGAAUCAUCGACAGGCAGACCGGCAUAUGCUGGUUUCUUGGGCUCCUCAGGUUUCUUCUCCGGCUCUACAAC___CUUGGGUUCCUCA__ (((.(((((..(.....((((.((.(((((....))))))).)))))..))))).)))...................................... (-11.02 = -11.26 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:40 2006