Locus 1881

Sequence ID 2L_DroMel_CAF1
Location 5,161,115 – 5,161,205
Length 90
Max. P 0.553449
window3024

overview

Window 4

Location 5,161,115 – 5,161,205
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 78.56
Mean single sequence MFE -22.98
Consensus MFE -12.62
Energy contribution -13.78
Covariance contribution 1.16
Combinations/Pair 1.30
Mean z-score -1.79
Structure conservation index 0.55
SVM decision value 0.04
SVM RNA-class probability 0.553449
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5161115 90 - 22407834
UUCAAGAACUGGUUCAUCUGACUGAGGAGUUUCCUUUUCCUUGACCGGCUUGUGUUUCUUUUCUCUCUUCGAGGGAACUGGAACUGGUUC
.....((((..((((..(((..(((((((.......)))))))..))).........(..(((((((...)))))))..)))))..)))) ( -25.60)
>DroSec_CAF1 43411 90 - 1
UUCAACAACCGGUACAUCUGACUGAGGAGUUUCCUUUUCCUUAACCGGCUUUUGUUUCUUUUCUCUCUUCGAGGGAAUUGGAACUGGUUC
......((((((((((.(((..(((((((.......)))))))..)))....)))(((..(((((((...)))))))..)))))))))). ( -25.30)
>DroSim_CAF1 23954 90 - 1
CUCAACAACCGGUACAUCUGACUGUGGAGUUUCCUUUUCCUUGACCGGCUUUUGUUUCUUUUCUCUCUUCGAGGGAACUGGAACUGGUUC
...(((..((((((((......)))((((.......))))...))))).....(((((..(((((((...)))))))..)))))..))). ( -22.40)
>DroEre_CAF1 43430 90 - 1
UUCCACAACAGGUACAUCUGACUGAGCAGUUUCUUUUUCCUUGACUGGCUUUUGUUUCUUUUCUCUCUUCGAGGGAACCGGAACUGGUUC
........((((....))))...((.(((((((..(((((((((..((................))..)))))))))..))))))).)). ( -19.99)
>DroAna_CAF1 46028 84 - 1
UUCCUUAACUUCCACAU-UGA-----UAGUCUCAACGGUCUUGGCUUGUUUGGAUUUCUUUUCGGUGUUGGAUGGAGCGGGAAUAGAUUC
(((((...(.(((((((-(((-----.(((((.((((((....)).)))).))))).....)))))).)))).)....)))))....... ( -21.60)
>consensus
UUCAACAACCGGUACAUCUGACUGAGGAGUUUCCUUUUCCUUGACCGGCUUUUGUUUCUUUUCUCUCUUCGAGGGAACUGGAACUGGUUC
........(((((.((.......((((.....)))).....))))))).....(((((..(((((((...)))))))..)))))...... (-12.62 = -13.78 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:39 2006