Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,158,051 – 5,158,143 |
Length | 92 |
Max. P | 0.999638 |
Location | 5,158,051 – 5,158,143 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 91.48 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -25.88 |
Energy contribution | -25.72 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -3.04 |
Structure conservation index | 0.92 |
SVM decision value | 3.82 |
SVM RNA-class probability | 0.999638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5158051 92 + 22407834 GGCGUCUUCCGUUUGCCCCUGCCACCGAUUUCCUUCUCCCAGGAACGGUGGCUAC-GGUACAACUGUCAACUGCCGUCAUUACUCUAAUCAAU (((((...(.(((((((...(((((((..(((((......))))))))))))...-)))).))).)...)).))).................. ( -29.30) >DroSec_CAF1 40387 92 + 1 GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUAC-GGCACAACUGUCAACUGCCGUCACUACUCUAAUCAAU (((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -30.30) >DroSim_CAF1 20538 92 + 1 GGCGUCUUCCGUUUGCCCCUGUCACCGAUCUCCUUCUCCCAGGAACGGUGGCUAC-GGCACAACUGUCAACUGCCGUCACUACUCUAAUCAAU (((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -27.60) >DroEre_CAF1 40425 92 + 1 GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUUC-GGUACAACUGUCAACUGCCGUCACUACUCUAAUCAAU (((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -28.30) >DroYak_CAF1 40464 92 + 1 GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUUC-GGUACAACUGUCAACUGCCGUCACUACUCUAAUCAAU (((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -28.30) >DroAna_CAF1 42941 93 + 1 GCCGUCUUCCGUUUGUCAUUGCCACCGAUCUCCUUCUCCCGGGUGCGGUGGCCUCUGGCCAAACAGUAAACUGCCGUCACUACUCAAAUAACA ((.((...(.((((((((..(((((((....(((......)))..)))))))...))).))))).)...)).))................... ( -24.60) >consensus GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUAC_GGCACAACUGUCAACUGCCGUCACUACUCUAAUCAAU (((((...(.(((((((...(((((((...((((......)))).)))))))....)))).))).)...)).))).................. (-25.88 = -25.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:38 2006