Locus 188

Sequence ID 2L_DroMel_CAF1
Location 571,437 – 571,557
Length 120
Max. P 0.564650
window281

overview

Window 1

Location 571,437 – 571,557
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -43.80
Consensus MFE -28.33
Energy contribution -30.78
Covariance contribution 2.45
Combinations/Pair 1.03
Mean z-score -2.86
Structure conservation index 0.65
SVM decision value 0.06
SVM RNA-class probability 0.564650
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 571437 120 - 22407834
UUCAACCGCCAUAGAAUCGUUCCACAAAUCUGGGGCAAAUAGGGCUUAACUCGCUUGCCCAGCUGAUUCACGAUGGUGCCGAAUCCAUUCAACAUCACCACAUCCUCAGUGGUCUGCUCU
(((...((((((.(((((((((((......)))))).....((((...........))))....)))))...))))))..))).............(((((.......)))))....... ( -32.40)
>DroPse_CAF1 11815 120 - 1
UUCAGCCGCCACAGGAUGGUGCCGCAAAUCUGCGGCAGAUAUGGCUUCACGCGCUUCCCCAACUGAUUGACGAUGGUGCCGAAGCCAUUCAGCAUGACCACAUCCUCGGUGGUUUGCUCC
...(((((((..((((((.(((((((....)))))))((.((((((((..(((((((..(((....)))..)).))))).))))))))))..........)))))).)))))))...... ( -49.50)
>DroPer_CAF1 11799 120 - 1
UUCAGCCGCCACAGGAUGGUGCCGCAAAUCUGCGGCAGAUAUGGCUUCACGCGCUUCCCCAACUGAUUGACGAUGGUGCCGAAGCCAUUCAGCAUGACCACAUCCUCGGUGGUUUGCUCC
...(((((((..((((((.(((((((....)))))))((.((((((((..(((((((..(((....)))..)).))))).))))))))))..........)))))).)))))))...... ( -49.50)
>consensus
UUCAGCCGCCACAGGAUGGUGCCGCAAAUCUGCGGCAGAUAUGGCUUCACGCGCUUCCCCAACUGAUUGACGAUGGUGCCGAAGCCAUUCAGCAUGACCACAUCCUCGGUGGUUUGCUCC
....((((((..((((((.(((((((....))))))).....((((((..(((((...................))))).))))))..............)))))).))))))....... (-28.33 = -30.78 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:46 2006