Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,154,767 – 5,154,887 |
Length | 120 |
Max. P | 0.605530 |
Location | 5,154,767 – 5,154,887 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -46.33 |
Consensus MFE | -35.85 |
Energy contribution | -34.72 |
Covariance contribution | -1.13 |
Combinations/Pair | 1.39 |
Mean z-score | -2.30 |
Structure conservation index | 0.77 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5154767 120 + 22407834 UUCACCCUGGUCAAGACCAACGGUCAGCUGAUCAUCGAGAACUGUCGCAACAGCGAGGAGAAGACGCUGGUGCAGACGACCAUCGAUCAGUUGGCCGCAUCGCUGGCCCAGGUACGCGGU ...(((..(((((.((....(((((((((((...((((....(((((((.(((((.........))))).))).))))....)))))))))))))))..))..)))))..)))....... ( -47.10) >DroVir_CAF1 75308 120 + 1 UUCACGCUGGUCAAGACCAACGGUCAGCUGAUCAUUGAGAACUGUCGCAACAGCGAGGAGAAGACGCUGGUGCAAUCGACCAUUGAUCAGCUGGCCGCGCAGCUAGCCCAAGUUCGUGGC .((((((((((....)))).((((((((((((((.((.((....))(((.(((((.........))))).))).......)).)))))))))))))).))((((......)))).)))). ( -47.70) >DroGri_CAF1 65645 120 + 1 UUCACUUUGGUCAAGACCAACGGCCAGCUGAUCAUUGAGAACUGUCGCAACAGCGAGGAGAAGACGCUGGUGCAAUCGACCAUUGAUCAGUUGGCCGCCCAGCUGGCCCAAGUCCGUGGC ...((((.(((((.(.....((((((((((((((.((.((....))(((.(((((.........))))).))).......)).)))))))))))))).....)))))).))))....... ( -47.90) >DroWil_CAF1 41536 120 + 1 UUUACCCUGGUCAAAACAAAUGGACAGCUAAUUAUUGAGAAUUGUCGCAACAGUGAGGAGAAGACACUGGUGCAGACGACAAUCGAUCAAUUGGCUGCCUCAUUGGCUCAGGUCCGUGGC .....(((((((((.......((.((((((((((((((...((((((((.(((((.........))))).))).)))))...))))).)))))))))))...))))).))))........ ( -41.80) >DroMoj_CAF1 94848 120 + 1 UUCACGCUGGUCAAGACCAACGGCCAGCUGAUCAUUGAGAAUUGUCGCAACAGCGAGGAGAAGACGCUGGUGCAGUCGACCAUUGAUCAGUUGGCCGCUCAGCUAGCCCAAGUGCGCGGC ....(((((((....)))).((((((((((((((.((....((.((((....)))).))...(((((....)).)))...)).))))))))))))))....((..........))))).. ( -48.20) >DroPer_CAF1 46143 120 + 1 UUCACCCUGGUCAAGACCAACGGCCAGCUGAUUAUCGAGAAUUGCCGCAACAGUGAGGAGAAGACACUGGUGCAGACGACCAUCGAUCAGUUGGCCGCUUCCCUGGCCCAAGUUCGGGGC .......((((....)))).(((((((((((...((((...((((.(((.(((((.........))))).))).).)))...)))))))))))))))...((((((.......)))))). ( -45.30) >consensus UUCACCCUGGUCAAGACCAACGGCCAGCUGAUCAUUGAGAACUGUCGCAACAGCGAGGAGAAGACGCUGGUGCAGACGACCAUCGAUCAGUUGGCCGCCCAGCUGGCCCAAGUCCGUGGC .......((((....)))).(((((((((((((.....(......)(((.(((((.........))))).)))...........)))))))))))))....((.(((....))).))... (-35.85 = -34.72 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:33 2006