Locus 1877

Sequence ID 2L_DroMel_CAF1
Location 5,152,792 – 5,152,892
Length 100
Max. P 0.798291
window3017

overview

Window 7

Location 5,152,792 – 5,152,892
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.26
Mean single sequence MFE -23.72
Consensus MFE -14.20
Energy contribution -14.62
Covariance contribution 0.42
Combinations/Pair 1.24
Mean z-score -1.65
Structure conservation index 0.60
SVM decision value 0.61
SVM RNA-class probability 0.798291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5152792 100 - 22407834
ACGCGGCUCUAAUUUAAAUGGCAAAAUAUGCUAGAAAUGCCGUGGCGAGCACGAGUGAAAGUGAAAGGCAAAUGGUAUUGGUAUAAAUUGGCGCGUGUUG
(((((.(.((((((((..(((((.....)))))..((((((((.((...(((........)))....))..))))))))....)))))))).)))))).. ( -28.10)
>DroVir_CAF1 72754 83 - 1
AGAUAUUUUAAAUUUAAAUGGCAAACUAUGCUAGAAAUGCG------AGCGCCA---AAAGUGAAAAGCGAAAGCAA--------CAGCGACGCGUGUUG
.(((((.....((((...(((((.....))))).))))(((------..(((((---....))....((....))..--------..))).)))))))). ( -16.90)
>DroSim_CAF1 13193 100 - 1
ACGCGGCUCUAAUUUAAAUGGCAAAAUAUGCUAGAAAUGCCGUGGCGAGCACGAGUGAAAGUGAAAGGCGAAUGGUAUUGGUAUAAAGUGGCGCGUGUUG
(((((.(.((........(((((.....)))))..((((((((.((...(((........)))....))..)))))))).......)).).))))).... ( -28.10)
>DroEre_CAF1 35240 94 - 1
ACGCGGCUCUAAUUUAAAUGGCAAAAUAUGCUAGAAAUGCCGUGGCAAGUACGAGUGAAAGUGAAAGGCACAUUU------CGUGAAGUGGCGCGUGUUG
(((((((....((((...(((((.....))))).)))))))(((.((..((((((.....(((.....)))..))------))))...)).))))))).. ( -25.50)
>DroYak_CAF1 35256 94 - 1
ACGCGGCUCUAAUUUAAAUGGCAAAAUAUGCUAGAAAUGCCGCGGUGAGCACGAGUGAAAGUGAAAGGCAAAUGA------UGUGAAGUGGCGCGUGUUG
.((((((....((((...(((((.....))))).))))))))))...((((((.((.(...(.(....(....).------..).)..).)).)))))). ( -24.20)
>DroAna_CAF1 37864 79 - 1
GCGCGGCUCUAAUUUAAAUGGCAAAAUAUGCGAGAAAUGCCUCGGCAAGU--GAGUGAAAGUGAAAGGCA-------------------GGCGCGUGUUC
(((((.((...((((...(.(((.....))).).))))((((...((..(--......)..))..)))))-------------------).))))).... ( -19.50)
>consensus
ACGCGGCUCUAAUUUAAAUGGCAAAAUAUGCUAGAAAUGCCGUGGCGAGCACGAGUGAAAGUGAAAGGCAAAUGG______U_U_AAGUGGCGCGUGUUG
(((((.(....((((...(((((.....))))).))))(((........(((........)))...)))....................).))))).... (-14.20 = -14.62 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:32 2006