Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,148,732 – 5,148,852 |
Length | 120 |
Max. P | 0.829394 |
Location | 5,148,732 – 5,148,852 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -22.21 |
Energy contribution | -22.66 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.88 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5148732 120 + 22407834 ACUGCGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGGCGCUCUCUAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA .((((((((.((................)).))))..........(((((...............((((((.......)))))).((......))))))))))).((((.....)))).. ( -28.99) >DroVir_CAF1 66658 120 + 1 ACUGCGUGAAGAAUCAAAUGAACUUAAAUCAUCACAUAAAGAAAUCGAGGCGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA .((((((((.((................)).))))..........(((((...............((((((.......)))))).((......))))))))))).((((.....)))).. ( -28.99) >DroPse_CAF1 37593 120 + 1 AUUACGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGACUCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA .....((((.((...................((.......))....(((.....)))........)).))))..(((((((((............)))))).)))((((.....)))).. ( -23.50) >DroGri_CAF1 58310 120 + 1 ACUGCGUGAAGAAUCAAAUGAACUUAAAUCAUCACAUAAAGAAAUCGAAGCGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA .((((((((.((................)).))))..........(((.................((((((.......)))))).((......))..))))))).((((.....)))).. ( -23.29) >DroMoj_CAF1 85834 120 + 1 ACUGCGUGAAGAAUCAAAUGAACUUAAAUCAUCACAUAAAGAAAUCGAAACGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA .((((((((.((................)).))))..........(((.................((((((.......)))))).((......))..))))))).((((.....)))).. ( -23.29) >DroPer_CAF1 37449 120 + 1 AUUACGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGACUCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA .....((((.((...................((.......))....(((.....)))........)).))))..(((((((((............)))))).)))((((.....)))).. ( -23.50) >consensus ACUGCGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGACGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA .((((((((.((................)).))))..........((((................((((((.......)))))).((......)).)))))))).((((.....)))).. (-22.21 = -22.66 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:31 2006