Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,146,045 – 5,146,137 |
Length | 92 |
Max. P | 0.744629 |
Location | 5,146,045 – 5,146,137 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 82.93 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -14.44 |
Energy contribution | -16.04 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.22 |
Mean z-score | -2.04 |
Structure conservation index | 0.64 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5146045 92 + 22407834 AAUUGUUGUUGCUGCCAAUUGUGAAAGAGAGAAUGGCAGCAAUACAGAAAGAGAGUGACGUGCACACGGUGGCGUAUGCGUAAUAUACAUAU ..((((.((((((((((.((.(....)...)).)))))))))))))).......(((...((((.(((....))).)))).....))).... ( -24.40) >DroSec_CAF1 28709 92 + 1 AAUUGUUGUUGUUGCCAAUUGUGAAAGAGAGAAUGGCAGCAAUACCGAAAGAGAGUGACGUGUACACGGUGGCGUAUGCUUAAUAUACAUAU ..(((.(((((((((((.((.(....)...)).))))))))))).)))......((.((((....)).)).))(((((.....))))).... ( -22.00) >DroSim_CAF1 6658 81 + 1 AAUUGUUGUUGUUGCCAAUCGUGAAAGAGAGAAUGGCAGCAAUACGGAAAGAGAGUGACGUGUACAUA------UA-----UAUAUACAUAU ..((((.((((((((((.((.(....)...)).))))))))))))))............(((((....------..-----..))))).... ( -19.40) >DroEre_CAF1 28455 92 + 1 AAUUGUUGUUGCUGCCAAUUAUAAAAGAGAGAGAGACAGCGACAAAGAGAGUGAGUGACGUGUACACGGUGGCGUAUGCGUUAUAUACACAU .....(((((((((((..((........))..).).))))))))).....(((.(((((((((((.(....).))))))))))).))).... ( -25.70) >DroYak_CAF1 28438 90 + 1 AAUUGUUGUUGUUGCCAAUUAUAAAAGAG--GGAGUCAGCGACACAGAAAGAGAGUGACGUGUACACGGUGGCGUAUGCGUGAUAUACACAU ...((((((((((.((..((....))..)--).)).))))))))..........((.((((((((.(....).)))))))).))........ ( -21.40) >consensus AAUUGUUGUUGUUGCCAAUUGUGAAAGAGAGAAUGGCAGCAAUACAGAAAGAGAGUGACGUGUACACGGUGGCGUAUGCGUAAUAUACAUAU ......(((((((((((.((..........)).)))))))))))..........((.((((((((........)))))))).))........ (-14.44 = -16.04 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:30 2006