Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,144,955 – 5,145,053 |
Length | 98 |
Max. P | 0.949962 |
Location | 5,144,955 – 5,145,053 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -15.99 |
Energy contribution | -17.38 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.16 |
Mean z-score | -2.55 |
Structure conservation index | 0.56 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.949962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5144955 98 + 22407834 CUCUUUUGUAUGUAUUUAGGCAGUCUUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG .....(((...((((((((((..((....))...))).)))-----)))).))).(.((((((((((((((...........)))))))))))))).)..... ( -31.10) >DroSec_CAF1 27634 89 + 1 CUCUUUUGUAUGUAUUUAGGCA---------AUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG .....(((...((((((((((.---------...))).)))-----)))).))).(.((((((((((((((...........)))))))))))))).)..... ( -30.10) >DroSim_CAF1 5576 98 + 1 CUCUUUUGUGUGUAUUUAGGCAGUCUUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG .......((..((((((((((..((....))...))).)))-----))))...))(.((((((((((((((...........)))))))))))))).)..... ( -32.00) >DroEre_CAF1 27344 96 + 1 CUCU--UGUGUGUAUUUAGGCACUCCUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUUUGUGCAUAUAAGUGUAUAGUCGAAGAACCAG (.((--(((((((((..(((((..(..(((((((((..(((-----....))))))))))))..)..))))).))))))))))).)................. ( -27.50) >DroYak_CAF1 27358 96 + 1 CUCU--UGUGUGUAUUUAGGCACUUUUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUCCAUGCUUUGUGCAUAUAAGUGUGUAGCCGACGAACCAG (.((--(((((((((..(((((.....(((((((((..(((-----....)))))))))))).....))))).))))))))))).)................. ( -27.10) >DroAna_CAF1 30116 95 + 1 A---UAUGUAGUUAUUUAUGUAUUUGCU---UUAGACUUGUAUGGUAUACACAACUGUUGGCCUGCAUAU--GGUGCGUUUAAGUAAGUGGUCGAAAGACCUG .---.((((((....))))))(((((((---(.((((......(((..(((....)))..))).((((..--.))))))))))))))))((((....)))).. ( -22.90) >consensus CUCUUUUGUAUGUAUUUAGGCACUCUUUUGAAUAGCCAUGA_____AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG ......(((((((((...((((.....(((((((((..(((.........)))))))))))).....))))..)))))))))..................... (-15.99 = -17.38 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:29 2006