Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,143,615 – 5,143,735 |
Length | 120 |
Max. P | 0.528901 |
Location | 5,143,615 – 5,143,735 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -18.62 |
Energy contribution | -17.02 |
Covariance contribution | -1.60 |
Combinations/Pair | 1.55 |
Mean z-score | -1.89 |
Structure conservation index | 0.56 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5143615 120 + 22407834 AUUUUGGCCCAGCAGGAUGAUAUGAUUAAACUGAUUGAAGAUCAGUUGGCCCAUCUUCGCCAGCUUCUGCUGCUCCGCGAGCAGUUUAUUGCUUUGAUUAAUGAGAUUAUUGCUUUUAUC .....((..((((((((((((.(((((.....)))))...))))((((((........))))))))))))))..))..(((((((......(((........)))...)))))))..... ( -30.90) >DroVir_CAF1 60638 120 + 1 AUUCUGACACAGCAGGACGAUAUGAUUAAAUUGAUUGAGGAUCAGUUGGCGCAUCUGCGCCAGCUGCUGAUGCUGCGCGAGCAAUUUAUUGCGCUGAUCAAUGAGAUAAUUGCCUUCAUU ...........(.(((.((((...(((..(((((((.((.((((((((((((....))))))...)))))).))((((((........)))))).)))))))..))).))))))).)... ( -41.10) >DroGri_CAF1 52203 120 + 1 AUUCUCGCACAACAGGACGACAUGAUUAAAUUGAUUGAGGAUCAAUUGGCACAUUUGCGUCAAUUGUUGCUGCUGCGCGAACAAUUCAUCGCACUCAUCAAUGAAAUUAUUGCCUUCAUU .............(((.(((..(((((..((((((.(((...((((((((.(....).))))))))..((....))((((........)))).)))))))))..)))))))))))..... ( -28.40) >DroWil_CAF1 26309 120 + 1 AUUCUAACUCAACAAGACGACAUGAUCAAAAUGAUUGAAGAUCAAUUGGCUCAUUUGCGACAGCUUCUUCUGCUUCGUGAGCAAUUUAUAGCCCUGAUUAAUGAAAUUAUUGCCUUCAUC .....................((((....(((((((...(((((...((((...((((.(((((.......)))..))..)))).....)))).))))).....)))))))....)))). ( -19.90) >DroMoj_CAF1 80384 120 + 1 AUCCUGGCCCAGCAGGACGAUAUGAUUAAGUUGAUUGAGGAUCAGUUGGCACAUCUGCGUCAGCUGUUGAUGCUGCGUGAGCAAUUCAUUGCGCUAAUCAACGAGAUCAUUGCCUUCAUU .(((((......))))).((.((((((..((((((((((.((((((((((.(....).))))))...)))).))(((..(........)..)))))))))))..)))))).....))... ( -37.80) >DroAna_CAF1 27607 120 + 1 AUCUUGGCCCAACAAGACGAUAUGAUCAAGCUGAUCGAGGAUCAGCUGGCCCAUCUCCGCCAGCUUCUGCUGCUCCGCGAGCAGUUCAUUGCCUUGAUCAACGAAAUCAUCGCCUUCAUC .(((((......)))))(((..((((...(.(((((((((...(((((((........)))))))...(((((((...)))))))......))))))))).)...)))))))........ ( -42.70) >consensus AUUCUGGCCCAACAGGACGAUAUGAUUAAAUUGAUUGAGGAUCAGUUGGCACAUCUGCGCCAGCUGCUGCUGCUGCGCGAGCAAUUCAUUGCCCUGAUCAAUGAAAUUAUUGCCUUCAUC .(((((......)))))......((((.....))))((((...(((((((........)))))))...........((((....(((((((.......)))))))....))))))))... (-18.62 = -17.02 + -1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:28 2006