Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,139,764 – 5,139,876 |
Length | 112 |
Max. P | 0.901084 |
Location | 5,139,764 – 5,139,876 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.48 |
Mean single sequence MFE | -39.32 |
Consensus MFE | -24.92 |
Energy contribution | -25.65 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.37 |
Mean z-score | -2.15 |
Structure conservation index | 0.63 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5139764 112 + 22407834 UAUUCAUUUU-----GCAGUCCUUGGCCUCUCGUCUUCCCGAGGGUCAGCAUCUGUUGGCCUUGGUGCAGGAUGCCUACUCGAAGGCAUCGAACAUCACUCCAGAGGAUAAGCAAGA ......((((-----((.((((((((...((((......))))(((((((....))))))).(((((...(((((((......)))))))...)))))..))).)))))..)))))) ( -40.70) >DroVir_CAF1 56472 110 + 1 U--UUUUUUU-----CCAGUCAUUGGCCUCCCACUUGCCCGAGGGCCAGCAUUUGCUGGCCAUGGUGCAGGAUGCCUACUCGAAGGCCUCCAAUAUUACGCCCGAAGAUAAGCAGGA .--......(-----((.(((.((((.(.......((((((..(((((((....))))))).))).)))(((.((((......)))).)))........).)))).))).....))) ( -37.90) >DroPse_CAF1 25445 117 + 1 CUCUCUUUUCCUCCAACAGUCUCUGACUUCUCGUCUGCCCGAGGGUCAGCAUUUGUUGGCAUUGGUGCAAGAUGCCUACUCGAAGGCCUCCAACAUCACGCCCGAGGACAAGCAGGA .((((((.(((((.(((((...((((((.((((......))))))))))...)))))(((..(((((...((.((((......)))).))...))))).))).))))).))).))). ( -40.80) >DroWil_CAF1 22469 116 + 1 -UAUUUUUUCCCCAUGUAGUCAUUGGCAUCUCGUUUGCCUGAGGGUCAGCAUCUUUUGGUUUUGGUUCAGGACGCCUACUCAAAGGCCUCGAACAUUACGCCAGAGGACAAGCAGGA -..........((.(((.....(((((.(((((......))))))))))..(((((((((....((((..((.((((......)))).)))))).....)))))))))...))))). ( -31.70) >DroAna_CAF1 23695 112 + 1 AUUUUUAUUU-----GUAGUCCCUGGCUUCCCGUCUGCCCGAGGGUCAGCAUCUUCUGGCCCUGGUGCAGGAUGCUUACUCCAAGGCGUCAAACAUCACGCCCGAGGACAAGCAGGA .......(((-----((.(((((.(((.......((((((.((((((((......)))))))))).))))(((((((......))))))).........))).).))))..))))). ( -43.90) >DroPer_CAF1 26293 117 + 1 CUUUCUUUUCCUCCAACAGUCUCUGACUUCUCGUCUGCCCGAGGGUCAGCAUUUGUUGGCCUUGGUGCAAGAUGCCUACUCGAAGGCCUCCAACAUCACGCCCGAGGACAAGCAGGA (((.(((.(((((.(((((...((((((.((((......))))))))))...)))))(((..(((((...((.((((......)))).))...))))).))).))))).))).))). ( -40.90) >consensus CUUUCUUUUC_____GCAGUCACUGGCUUCUCGUCUGCCCGAGGGUCAGCAUCUGUUGGCCUUGGUGCAGGAUGCCUACUCGAAGGCCUCCAACAUCACGCCCGAGGACAAGCAGGA ..................((((..(((.......((((.(.(((((((((....))))))))).).))))((.((((......)))).)).........)))...))))........ (-24.92 = -25.65 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006