Locus 1870

Sequence ID 2L_DroMel_CAF1
Location 5,136,940 – 5,137,060
Length 120
Max. P 0.538409
window3009

overview

Window 9

Location 5,136,940 – 5,137,060
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.39
Mean single sequence MFE -39.12
Consensus MFE -27.92
Energy contribution -28.10
Covariance contribution 0.18
Combinations/Pair 1.35
Mean z-score -1.66
Structure conservation index 0.71
SVM decision value 0.01
SVM RNA-class probability 0.538409
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5136940 120 - 22407834
UGGACUUAACGAUCUUCUGUUCACAAGCCUGCUGCAACUUGGCCUCCCGGUCAGUAAUCCAUUGCUGCAGCUGAGAGUAGCUGGAACUGUAGUCAGCCCAUUGCAAUAGAUUUGUCUCCA
.(((....((((...((((((((...((..(((((((((.((((....)))))))..((((..(((((........)))))))))..))))))..))....)).)))))).)))).))). ( -34.00)
>DroVir_CAF1 53466 120 - 1
GGGAUUUGACAAUCUUUUGCUCGCACGCCUGCUGCAGCUUGGCCUCCCUGUCGGUAAUCCAUUGCUGCAACUGAGUGUAACUGGAGCUGUAAUCGGCCCAUUGCAACAGAUUUGUCUCCA
.(((...((((((((.((((..((((....(.((((((.(((....((....))....)))..)))))).)...))))...(((.((((....)))))))..)))).))).)))))))). ( -40.90)
>DroGri_CAF1 45253 120 - 1
GGGAUUUAAUAAUCUUUUGCUCGCAUGCCUGCUGCAGUUUGGCCUCCCUGUCUGUAAUCCAUUGUUGUAGCUGCGAAUAGCUGGAACUGUAAUCGGCCCAUUGCAGUAGAUUUGUUUCGA
((((((....))))))......(((...((((((((((..((((........((.....))..(((.((((((....)))))).))).......)))).))))))))))...)))..... ( -32.00)
>DroWil_CAF1 19717 120 - 1
UAGAUUUGACAAUCUUUUGUUCACAGGCCUGCUGGAGCUUCGCUUCUCUGUCGGUGAUCCAUUGCUGCAGUUGAGAAUAACUCGAACUGUAGUCGGCCCAUUGCAGAAGAUUUGUCUCCA
.......(((((((((((((.....((((...((((...(((((........)))))))))..((((((((((((.....))).))))))))).))))....)))))))).))))).... ( -42.20)
>DroMoj_CAF1 73058 120 - 1
GCGACUUGAUAAUCUUUUGCUCGCACGCCUGUUGCAGCUUGGCCUCUCGGUCGGUGAUCCAUUGCUGCAGCUGCGUAUAGCUGGAGCUGUAGUCGGCCCAUUGCAACAGAUUCGUCUCCA
.......((((((((.((((..((((((..((((((((..((((....))))((....))...)))))))).))))...))(((.((((....)))))))..)))).))))).))).... ( -44.60)
>DroAna_CAF1 20866 120 - 1
UGGACUUGACAAUCUUUGCCUCACAAGCCUGUUGCAACUUGGCCUCCCGAUCGGUAAUCCAUUGCUGCAGCUGCGAGUAGCUGGAGCUGUAGUCGGCCCACUGGAGGAGAUUCGUCUCCA
.(((...(((((((((..((......(((..(((((...(((....((....))....)))..(((.((((((....)))))).))))))))..))).....))..)))))).)))))). ( -41.00)
>consensus
GGGACUUGACAAUCUUUUGCUCACAAGCCUGCUGCAGCUUGGCCUCCCGGUCGGUAAUCCAUUGCUGCAGCUGAGAAUAGCUGGAACUGUAGUCGGCCCAUUGCAACAGAUUUGUCUCCA
.......((((((((.((((......(((.((((((((((...........((((((....))))))((((((....)))))))))))))))).))).....)))).))))).))).... (-27.92 = -28.10 +   0.18)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:24 2006