Locus 1869

Sequence ID 2L_DroMel_CAF1
Location 5,134,366 – 5,134,486
Length 120
Max. P 0.561522
window3008

overview

Window 8

Location 5,134,366 – 5,134,486
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.00
Mean single sequence MFE -32.76
Consensus MFE -14.03
Energy contribution -14.78
Covariance contribution 0.75
Combinations/Pair 1.37
Mean z-score -2.32
Structure conservation index 0.43
SVM decision value 0.06
SVM RNA-class probability 0.561522
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5134366 120 - 22407834
CAUCCAGAGUCGUUUUCAGCUCAAUAUCAGCUGGAAGGGCAUUCUCCGUUUCAUCCAACCAGCUCUUCAAGCUGUCAGCGAUCUCAUCAAAGCCAGACCACUUGGCGAUCUUAUCCUGAA
......((((((((..(((((.......((((((..(((..............)))..)))))).....)))))..))))).)))......(((((.....))))).............. ( -32.94)
>DroVir_CAF1 50892 120 - 1
CGUCCAGCGUGGUCUUUAGCUCAAUUUCAGCUGGCAACUCAUGCUCCACAUCAUCCAGCCAGCUCUUAAGCUUGUCAGCAGUCUCAUCAAAGCCGGACCACUUGGCAAUCUUAUCCUGUA
.(.((((.(((((((...(((.......(((((((.....(((.....)))......))))))).....(((....)))...........))).)))))))))))).............. ( -30.70)
>DroGri_CAF1 42679 120 - 1
CAUCCAGCGUUGUUCUCAACUCAAUUUCAGUGGGCAACUCGCGCUCUACAUUAUCCAGCCAGCUCUUCAGACUGUCAGCAGUCUCAUCAAAUCCUGACCACUUGGCAAUUUUAUCCUGUA
.....(((((((....)))).........((((....).))))))............(((((......((((((....))))))..(((.....)))....))))).............. ( -23.90)
>DroWil_CAF1 17143 120 - 1
CAUCCAAAGUGGUCUUUAAUUCGAUUUCUGCAGGCAAGGCAUUCUCAGUCUCGUCUAGCCAACUCUUCAACUUGUCAGCGAUUUCAUCGAAUCCAGACCACUUUGAAAUCUUAUCCUGAA
....(((((((((((...(((((((.((...((((.((((.......)))).)))).((..((..........))..))))....)))))))..)))))))))))............... ( -32.30)
>DroMoj_CAF1 70484 120 - 1
CAUCCAGCGUGGUCUUCAGCUCAAUCUCAGCUGGCAGUUCGCGCUCCACAUUGUCUAGCCAGCUCUUCAGACUGUCAGCGGUCUCAUCAAAGCCUGACCACUUGGCAAUCUUAUCCUGUA
...((((.((((((....(((.......(((((((((...(((........))))).)))))))....((((((....))))))......)))..))))))))))............... ( -33.70)
>DroAna_CAF1 18292 120 - 1
CAUCGAGAGUGGUCUUCAGCUCAAUAUCAGCCGGGAGAGCAUUCUCGGUUUCGUCCAGCCAGGCCUUGAGGUUGUCGGCAAUCUCAUCGAAGCCAGACCACUUGGCAAUCUUAUCCUGAA
.((((((((((.(((((.(((.......)))..))))).))))))))))..........((((...((((((((....)))))))).....(((((.....)))))........)))).. ( -43.00)
>consensus
CAUCCAGAGUGGUCUUCAGCUCAAUUUCAGCUGGCAACGCAUGCUCCACAUCAUCCAGCCAGCUCUUCAGACUGUCAGCAAUCUCAUCAAAGCCAGACCACUUGGCAAUCUUAUCCUGAA
...((((.(((((((..............((((((((..................................))))))))...............)))))))))))............... (-14.03 = -14.78 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:23 2006