Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,111,816 – 5,111,908 |
Length | 92 |
Max. P | 0.794363 |
Location | 5,111,816 – 5,111,908 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 84.07 |
Mean single sequence MFE | -16.42 |
Consensus MFE | -14.02 |
Energy contribution | -14.85 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.85 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5111816 92 - 22407834 CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAUACA-AC--------AAUCCAACAAUCCAACUAUCGAACAUC-- ...(((.(((..(((((((((((..........))))))))))).))))))............-..--------...........................-- ( -17.80) >DroSec_CAF1 12110 94 - 1 CCAGACACUUAAUUGCUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACA-AC--------AAUCCAACAAUCCAACUAUCGAACAUCCC ...(((.(((....((((((((((.....)))))))..)))....))))))............-..--------............................. ( -12.50) >DroSim_CAF1 11941 94 - 1 CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACA-GC--------AAUCCAACAAUCCAACUAUCGAACAUCCC ...(((.(((..(((((((((((..........))))))))))).))))))............-..--------............................. ( -17.80) >DroEre_CAF1 13045 100 - 1 CCAGACAGCUAAUUGGUUGUUGUGCUAAACAUAAUAACAGCCUAGGAGGUCACAUAAUAGACA-ACUAUUCAACAACCCAACAAUCCAACAAUCGAACAUC-- ...(((..((....(((((((((..........)))))))))..))..)))....(((((...-.)))))...............................-- ( -15.90) >DroYak_CAF1 12134 100 - 1 CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCUAGGAGGUCACAUAAUAGACA-ACAAUUCAACAAUUCAACAAUCCAACAAUCGAACAUC-- ...(((.(((....(((((((((..........)))))))))...))))))............-.....................................-- ( -16.70) >DroAna_CAF1 15324 77 - 1 CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACACAC--------CAUCCACCAAC------------------ ...(((.(((..(((((((((((..........))))))))))).))))))...............--------...........------------------ ( -17.80) >consensus CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACA_AC________AAUCCAACAAUCCAACUAUCGAACAUC__ ...(((.(((...((((((((((..........))))))))))..)))))).................................................... (-14.02 = -14.85 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:14 2006