Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,109,642 – 5,109,741 |
Length | 99 |
Max. P | 0.714395 |
Location | 5,109,642 – 5,109,741 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.81 |
Mean single sequence MFE | -47.17 |
Consensus MFE | -28.24 |
Energy contribution | -28.05 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.32 |
Mean z-score | -1.72 |
Structure conservation index | 0.60 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5109642 99 - 22407834 ACCUCCACACGACGCGG------------------C---GGAGUUGUGUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAAGCCACGUUGCCUCUCCUGG .........(((((.((------------------(---((((..(((.((((.((((((.(((......)))))))))))))))))))))))..(((...))).)))))((......)) ( -43.30) >DroSec_CAF1 9935 99 - 1 ACUUCCACGCGACGCGG------------------C---GGAGUUGUUUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUAGCUGCCUCCGCCUCGGCCAAGCCACGUUGCCUUUCCUGU ........((((((.((------------------(---((((......((.((((((((.(((......)))))))))..)).)))))))))..(((...))).))))))......... ( -42.20) >DroWil_CAF1 15341 102 - 1 ACUUCUACGCGACGCGG------------------CGACGGUGUGGCAUGACGCAAGUGGACCUGCUGGAAGGCUAAUUUGGCUGCCUCUGCUUCCGCCAAGCCACGCUGUCGCUCCUCC .......(((...)))(------------------((((((((((((.((.((.(((..((((....))..(((..........)))))..))).)).)).)))))))))))))...... ( -44.00) >DroYak_CAF1 9921 99 - 1 ACCUCCACACGGCGCGG------------------C---GGAGUGGUGUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCCGCCAUGCCACGUUGCCUCUCCUGG ..........((((.((------------------(---(((((((.((((((.((((((.(((......))))))))))))).))..))).))))))).))))......((......)) ( -47.90) >DroAna_CAF1 13118 99 - 1 ACUUCCACGCGGCGCGG------------------C---GGAGUCGUGUGCCGGAGCUGGACUUGCUGGAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAAGCCCCGCUGCCUCUCCUGU ........((((((.((------------------(---((((..(((.((((.((((((.(((......)))))))))))))))))))))))..(((...))).))))))......... ( -45.00) >DroPer_CAF1 13689 117 - 1 ACCUCCACCAGACGCGGCAGCGACGACGGCGGUGGG---GGCGUGGUGUGCCGCAGUUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAGACCGCGCUGUCGCUCCAAA ..........((.(((((((((....(((((((.((---((((.((((.((((.((((((.(((......)))))))))))))))))..)))))).))).).)))))))))))))).... ( -60.60) >consensus ACCUCCACGCGACGCGG__________________C___GGAGUGGUGUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAAGCCACGCUGCCUCUCCUGG ..........((((((.......................((((..(((.((((.((((((.(((......))))))))))))))))))))((....)).......))).)))........ (-28.24 = -28.05 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:13 2006