Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,109,082 – 5,109,198 |
Length | 116 |
Max. P | 0.581959 |
Location | 5,109,082 – 5,109,198 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -32.17 |
Consensus MFE | -19.99 |
Energy contribution | -20.50 |
Covariance contribution | 0.51 |
Combinations/Pair | 1.33 |
Mean z-score | -1.88 |
Structure conservation index | 0.62 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5109082 116 - 22407834 -UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCCACUAUCAGCCAUAAUAGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC -..((((((((..(((((((......)))))))(((.---...)))....)))))))).((((.........))))...((((...(.(((......))).)...))))........... ( -32.10) >DroSec_CAF1 9372 116 - 1 -UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCUACUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC -..((((((((..(((((((......)))))))((((---.....)))).)))))))).((((.(((((.((.......)).....)))))))))........(((....)))....... ( -30.90) >DroEre_CAF1 10283 116 - 1 -UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCCACUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC -..((((((((..(((((((......)))))))(((.---...)))....)))))))).((((.(((((.((.......)).....)))))))))........(((....)))....... ( -32.40) >DroWil_CAF1 14749 113 - 1 AUCUAUGGU---UGGAUCCUUAUGUUUG---CCUGGAUCAUCUGUGCUAUCAGCCAUGAUAGCAUUGAAUUUCUUAUUUGAUUCGUUUUAGAACAAAAUGUCAUUUGGUUUGAGUUUCU- .........---.(((..((((.....(---((..(((..((.(((((((((....))))))))).))........((((.(((......)))))))..)))....))).))))..)))- ( -24.70) >DroYak_CAF1 9346 116 - 1 -UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCCAGUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC -..((((((((..(((((((......)))))))(((.---...)))....)))))))).((((.(((((.((.......)).....)))))))))........(((....)))....... ( -32.70) >DroAna_CAF1 12576 116 - 1 -UCUAUGAUUGUUGGAUCCCCUGGCUUGGAUCCUGGA---UCUCCGCUAUCAGCCAUGAUGGCAUUGGUUUCGCUAAUUGCCCUUGGUUAAGCCAAAUGGUCAUCGGUUAUGGGUUUGCC -((((((((((..((((((........))))))..((---((...(((((((....))))))).(((((((.(((((......))))).)))))))..))))..))))))))))...... ( -40.20) >consensus _UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU___CCUCCACUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC ...((((((((..(((((((......)))))))(((.......)))....)))))))).((((.(((((.................)))))))))........(((....)))....... (-19.99 = -20.50 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:12 2006