Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 570,877 – 570,997 |
Length | 120 |
Max. P | 0.508061 |
Location | 570,877 – 570,997 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -48.47 |
Consensus MFE | -42.64 |
Energy contribution | -43.20 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.61 |
Structure conservation index | 0.88 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 570877 120 + 22407834 GCAGCCACUCCGUACGGCAUUGAAUCCUUCGAUUCCGUGCUAAAGCCGCUUUGGAAGGGUAUUCGCACGCAUCGCGGCAAAGGUCUGGCCGCCUUCCUCAAGGCUAUUGGCUAUUUGAUU ..(((((....((((((.(((((.....))))).))))))...((((.....((((((......((.(((...)))))...((.....)).))))))....))))..)))))........ ( -43.60) >DroPse_CAF1 11255 120 + 1 GCUGCCACGCCCUACGGCAUUGAGUCGUUCGAUUCGGUGCUGAAGCCCCUGUGGAAGGGCAUCCGCACGCAUCGCGGCAAGGGACUGGCCGCCUUCCUGAAGGCCAUUGGCUACCUGAUU (((((((..((((.((((((((((((....))))))))))))..((((........))))..((((.......))))..))))..)))).(((((....)))))....)))......... ( -50.90) >DroPer_CAF1 11239 120 + 1 GCUGCCACGCCCUACGGCAUUGAGUCGUUCGAUUCGGUGCUGAAGCCCCUGUGGAAGGGCAUCCGCACGCAUCGCGGCAAGGGACUGGCCGCCUUCCUGAAGGCCAUUGGCUACCUGAUU (((((((..((((.((((((((((((....))))))))))))..((((........))))..((((.......))))..))))..)))).(((((....)))))....)))......... ( -50.90) >consensus GCUGCCACGCCCUACGGCAUUGAGUCGUUCGAUUCGGUGCUGAAGCCCCUGUGGAAGGGCAUCCGCACGCAUCGCGGCAAGGGACUGGCCGCCUUCCUGAAGGCCAUUGGCUACCUGAUU ((.((((..((((.((((((((((((....))))))))))))..(((.((.....)))))....((.(((...))))).))))..)))).(((((....))))).....))......... (-42.64 = -43.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:41 2006