Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,103,985 – 5,104,095 |
Length | 110 |
Max. P | 0.880218 |
Location | 5,103,985 – 5,104,095 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 74.53 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -15.80 |
Energy contribution | -16.28 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.19 |
Mean z-score | -2.00 |
Structure conservation index | 0.46 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5103985 110 - 22407834 GUCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUACGGCGGAUUCCGAUGAUUCGAAAGAUUCGGAGG---------AUGCGGGUGAUGCGGAGGAGAAGGGAGUGGAACUGU .((((((..(..(((.((....))....)))..((((....(.(((..((((((....((....)).)))))).---------.))).)....))))........)..))))))..... ( -35.60) >DroSec_CAF1 4368 102 - 1 GCCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUGCGGUGGAUUCUGAUGAAUCGAAAGAUUCGGAGU---------AUGCGGGUGCUGCGGAGGAGGAGGGGGU-------- .(((.((((((((((.((..(((((.(((.((.(((....))).)).))))))))(((((....))))).....---------...))..)))).))))))))).......-------- ( -33.00) >DroSim_CAF1 4343 102 - 1 GUCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUGCGGUGGAUUCCGAUGAAUCGAAAGAUUCGGAGG---------AUGCGGGUGCUGCGGAGGAGGAGGGGGU-------- .(((.((((((((((.((.((((.(((((.((.(((....))).)).)))))..((((((....))))))...)---------)))))..)))).)))))).)))......-------- ( -35.10) >DroEre_CAF1 4406 115 - 1 GUCUACUUUCGAGCGAUGAUGUCAGGAGUCCUAUGCGGAUACGGCGGAUUUCGAUGAUUCGGAUGAUUCGGAUGAUACGGGGGAUGCGGGUGCCGCGGAUGACGGGGGAG----ACGUG ((((.((..(....(((...))).(..((((...((((...(.(((..(..((((.(((((((...))))))).)).))..)..))).)...))))))))..))..))))----))... ( -40.40) >DroYak_CAF1 4341 85 - 1 GUCUACUUUCGAGCGAUGAUGUCAGGAGUCCGAUGCGGAUGCGACGGAUUCCGAUGAUUCGGUUGAUUGGGAGGA------------------------------GGAAA----ACUUG .(((.((..(((.((((...((((((((((((.(((....))).))))))))..))))...)))).)))..))..------------------------------)))..----..... ( -29.40) >consensus GUCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUGCGGCGGAUUCCGAUGAUUCGAAAGAUUCGGAGG_________AUGCGGGUGCUGCGGAGGAGGAGGGAGU___AC___ .(((.(((((((((..(((.(((.(((((.((.(((....))).)).))))))))...)))...).))))))))..........((((.....))))........)))........... (-15.80 = -16.28 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006