Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,100,954 – 5,101,054 |
Length | 100 |
Max. P | 0.746768 |
Location | 5,100,954 – 5,101,054 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.44 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -20.60 |
Energy contribution | -20.63 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -3.46 |
Structure conservation index | 0.75 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5100954 100 + 22407834 AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCUAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG .((((((((((----(((((((....))))))))).....(((((.(..(((...((((((...-....)))))).....)))..).)))))..))))))))... ( -29.70) >DroSec_CAF1 1346 100 + 1 AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG .((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.-...)).)))).....)))..).)))))..))))))))... ( -27.10) >DroSim_CAF1 1340 100 + 1 AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG .((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.-...)).)))).....)))..).)))))..))))))))... ( -27.10) >DroEre_CAF1 1342 101 + 1 AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGAAAUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG .((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.....)).)))).....)))..).)))))..))))))))... ( -27.10) >DroYak_CAF1 1309 100 + 1 AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG .((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.-...)).)))).....)))..).)))))..))))))))... ( -27.10) >DroAna_CAF1 4672 103 + 1 AUACACGUCUAUCUAUAUAUAUCUGAAUAUAUAGAAAUUGA-AUUGGAAUUGUUCGCGCAAAGA-AUUGUAGCGUGAAAUCAAAGCAAAUCUGCGGUGUGUAAUC .(((((..(..(((((((((......)))))))))..(((.-.((((.....(((((((.....-......))))))).))))..)))......)..)))))... ( -26.10) >consensus AUACACGCCUC____UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA_AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG .((((((((......(((((((....))))))).......(((((.(..(((...((((............)))).....)))..).)))))..))))))))... (-20.60 = -20.63 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:09 2006