Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,091,249 – 5,091,369 |
Length | 120 |
Max. P | 0.552401 |
Location | 5,091,249 – 5,091,369 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -32.02 |
Energy contribution | -32.47 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.94 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5091249 120 + 22407834 CUAGACAAUUACGAUAGAGUAAAACCAGCUUUACUACGGGGAAAUCUUUUUCUUGUACAGCAUCUGCAGUUUCUUCUUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA (((.((..((((......)))).(((.((...((((((((((((....)))))....((((...(((((........))))).))))..........))))))).)).))))).)))... ( -29.30) >DroSim_CAF1 23188 120 + 1 CUAGACAAUUACGAUAGAGUAAAACCCGCUUUACUACGGGGAAAUCUUUUUCUUGUACAGCAUCUGCAGCUUCUUCUUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA ........((((......)))).((((((.....(((((((((.....)))))))))..((((((((((((.(....((((..((.....)).))))..).)))))))))))))))))). ( -36.20) >DroYak_CAF1 22269 119 + 1 CUAGACAAUUACGAUAGAGUAAAACCCGCUUUACUACGGGGAAAUCUU-UUCUUGUACAGCAUCUGCAGCUUCUUCAUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA ........((((......)))).((((((.....(((((((((....)-))))))))..((((((((((((....((((((..((.....)).)))).)).)))))))))))))))))). ( -37.10) >consensus CUAGACAAUUACGAUAGAGUAAAACCCGCUUUACUACGGGGAAAUCUUUUUCUUGUACAGCAUCUGCAGCUUCUUCUUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA ........((((......)))).((((((.....(((((((((.....)))))))))..((((((((((((.(....((((..((.....)).))))..).)))))))))))))))))). (-32.02 = -32.47 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:04 2006