Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,090,558 – 5,090,659 |
Length | 101 |
Max. P | 0.695280 |
Location | 5,090,558 – 5,090,659 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -20.37 |
Consensus MFE | -14.60 |
Energy contribution | -14.94 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.72 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5090558 101 + 22407834 CACCCAUGUAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCUAAAACCACUCUAAAGAUGACCCCGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU ....(((.(((((....))))).))).(((........)))............((((((....))))))...(((((((((((....))).)))))))).. ( -18.30) >DroSec_CAF1 19910 89 + 1 CACCCAA-CAUAUGAUUCUUUCAAUGAAGAUUACCAUUUCGAAAACCACUC-----------CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU .......-(((.(((.....))))))..............((((((.....-----------..))))))..(((((((((((....))).)))))))).. ( -19.50) >DroSim_CAF1 22511 89 + 1 CACCCCA-GAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCGAAAACCACUC-----------CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU .......-((((((...((((......))))...))))))((((((.....-----------..))))))..(((((((((((....))).)))))))).. ( -23.30) >consensus CACCCAA_CAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCGAAAACCACUC___________CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU ........................................((((((..................))))))..(((((((((((....))).)))))))).. (-14.60 = -14.94 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:03 2006