Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,089,296 – 5,089,408 |
Length | 112 |
Max. P | 0.636911 |
Location | 5,089,296 – 5,089,408 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.63 |
Mean single sequence MFE | -27.65 |
Consensus MFE | -25.24 |
Energy contribution | -25.55 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.91 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5089296 112 - 22407834 AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCUGGAAAUUUAUGAGCCAUGCCCCCCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAAC--CCGACCCAAUCU------ ......(((.((((.(((((...((((....))))...))))).)))))))............((((((..(((....)))..((.((.....))))...--.)))))).....------ ( -28.90) >DroSec_CAF1 18669 111 - 1 AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCGGGAAAUUUAUGAGCCAUGCCC-CCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAGC--CCGACCCAAUCU------ ......(((.((((.(((((...((((....))))...))))).))))))).......-....((((((...((....))((.((.((.....)))).))--.)))))).....------ ( -29.00) >DroSim_CAF1 21284 111 - 1 AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCUGGAAAUUUAUGAGCCAUGCCC-CCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAGC--CCGACCCAAUCU------ ......(((.((((.(((((...((((....))))...))))).))))))).......-....((((((...((....))((.((.((.....)))).))--.)))))).....------ ( -29.00) >DroYak_CAF1 20284 118 - 1 AAUUAUGCUGCAUAUAUUUCAUACAGCAAUAGCAGCAGGAAAUUUAUGAGCCAUGCCC--CCAGGGUCGAACUUGACAAAGCCCCACCGAACAGUGCACCCCCCGACCCAAUCUCCCAUC ......(((.((((.(((((.....((....)).....))))).))))))).......--...((((((..(((....)))...(((......))).......))))))........... ( -23.70) >consensus AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCUGGAAAUUUAUGAGCCAUGCCC_CCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAGC__CCGACCCAAUCU______ ......(((.((((.(((((...((((....))))...))))).)))))))............((((((..(((....))).....((.....))........))))))........... (-25.24 = -25.55 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:00 2006