Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 570,045 – 570,165 |
Length | 120 |
Max. P | 0.607385 |
Location | 570,045 – 570,165 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -39.99 |
Consensus MFE | -34.11 |
Energy contribution | -33.34 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.16 |
Mean z-score | -2.02 |
Structure conservation index | 0.85 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 570045 120 - 22407834 UUGUCAAAAUAUUGCGCAUCCUCUGGUUUCAUGAAGGGGAGAUUUUGCCCCUUUGGUUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACUUGGAUGAAGAAACCGGCUGGGGUGCCA ............((.(((((((((((((((..(((((((........)))))))......(((((((.......((((....)))).......))))))).))))))))..))))))))) ( -43.04) >DroPse_CAF1 10423 120 - 1 UUGUCAAAAUACUGUGCAUCCUCUGGCUUCAUGAAGGGCAGAUUCUGCCCCUUUGGUUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACCUGGAUGAAGAAGCCCGCCGGCGUGCCA .............(.((((...(((((((((((..((((((...))))))....(((.....)))))))))...(((.(((((((((.......)))).)))))))).))))).))))). ( -38.30) >DroPer_CAF1 10407 120 - 1 UUGUCAAAAUACUGUGCAUCCUCUGGCUUCAUGAAGGGCAGAUUCUGCCCCUUUGGCUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACCUGGAUGAAGAAGCCCGCCGGCGUGCCA .............(.((((...(((((........((((((...))))))....((((..(((((((.......((((....)))).......)))))))...)))).))))).))))). ( -38.64) >consensus UUGUCAAAAUACUGUGCAUCCUCUGGCUUCAUGAAGGGCAGAUUCUGCCCCUUUGGUUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACCUGGAUGAAGAAGCCCGCCGGCGUGCCA ............((.((((...(((((........((((((...))))))....((((..(((((((.......((((....)))).......)))))))...)))).))))).)))))) (-34.11 = -33.34 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:40 2006