Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,087,637 – 5,087,731 |
Length | 94 |
Max. P | 0.816145 |
Location | 5,087,637 – 5,087,731 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 97.87 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -31.19 |
Energy contribution | -31.25 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.87 |
Structure conservation index | 0.99 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5087637 94 - 22407834 CCGACGAUGACUCAGAAAUUCUUUGGCAUAAUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU ...(((((..((((.....((((..(.....((.(((((((.(((...(((......))).))).))))))))).)..))))...))))))))) ( -28.30) >DroSec_CAF1 17046 94 - 1 CCGACGAUGACUCAGAAAUUCUUUGGCAUAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAGGAUUAUGAGGUUGU ...(((((..((((..(((((((......((((.(((((((.(((...(((......))).))).))))))))))).))))))).))))))))) ( -33.90) >DroSim_CAF1 19657 94 - 1 CCGACGAUGACUCAGAAAUUCUUUGGCAUAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU ...(((((..((((.....((((..(....(((.(((((((.(((...(((......))).))).)))))))))))..))))...))))))))) ( -32.10) >DroYak_CAF1 18579 94 - 1 CCCACGAUGACUCAGAAAUUCUUUGGCACAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU ...(((((..((((.....((((..(....(((.(((((((.(((...(((......))).))).)))))))))))..))))...))))))))) ( -32.00) >consensus CCGACGAUGACUCAGAAAUUCUUUGGCAUAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU ...(((((..((((.....((((..(....(((.(((((((.(((...(((......))).))).)))))))))))..))))...))))))))) (-31.19 = -31.25 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:50 2006